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The map label for this gene is ygdH [H]

Identifier: 218547686

GI number: 218547686

Start: 280702

End: 282066

Strand: Reverse

Name: ygdH [H]

Synonym: EFER_0265

Alternate gene names: 218547686

Gene position: 282066-280702 (Counterclockwise)

Preceding gene: 218547687

Following gene: 218547685

Centisome position: 6.15

GC content: 50.04

Gene sequence:

>1365_bases
TTGATTACACATATTAGCCCGCTTGGCTCCATGGATATGTTGTCGCAGCTGGAAGTGGATATGCTTAAACGCACCGCCAG
CAGCGACCTCTATCAACTGTTTCGTAACTGTTCTCTCGCCGTACTCAACTCCGGCAGTTTAACTGACAACAGTAAAGAGC
TGCTGTCTCGTTTTGAAAACTTCGATATAAACGTTCTTCGCCGTGAACGCGGCGTAAAACTGGAACTGATTAATCCACCG
GAAGATGCTTTCGTTGATGGCCGGATTATCCGCTCACTACAGGCCAACCTGTTTGCGGTGCTGCGCGATATACTGTTTGT
CTATGGGCAAATCCATAACACTGTCCGCTTTCCGAACCTGAATCTCGATAATTCTGTTCATATCACCAACCTCGTGTTTT
CTATATTGCGTAACGCCCGTGCGCTGCACGTGGGTGAAGCGCCAAATATGGTGGTGTGCTGGGGTGGTCACTCAATTAAT
GAAACTGAATATCTGTATGCGCGTCGCGTCGGCAATCAACTTGGTCTGCGTGAGCTGAATATCTGTACCGGCTGTGGTCC
GGGAGCGATGGAAGCGCCAATGAAAGGCGCGGCAGTGGGTCATGCCCAGCAGCGTTACAAAGACAGCCGTTTTATTGGTA
TGACAGAGCCATCGATCATTGCTGCAGAACCACCTAACCCGCTAGTCAACGAATTGATCATCATGCCGGATATCGAAAAA
CGGCTGGAAGCGTTTGTCCGTATCGCCCACGGCATCATCATCTTCCCTGGTGGTGTAGGTACGGCGGAGGAGCTGCTGTA
TCTGCTGGGGATTTTGATGAATCCGGCCAACAAAGATCAGGTTTTACCGCTGATCCTCACCGGGCCGAAAGAGAGCGCCG
ATTACTTCCGCGTACTGGATGAATTTGTTGTCCATACGCTGGGGGAAAGTGCGCGCCGCCATTATCGCATTATCATTGAT
GATGCCGCCGAAGTTGCCCGGCAGATGAAAAAATCGATGCCGCTGGTGAAAGAAAATCGCCGTGATACAGGCGATGCCTA
CAGCTTTAACTGGTCTATGCGCATCACACCAGATCTGCAAATGCCGTTTGAGCCGACTCACGAGAATATGGCTAATCTGA
AGCTTTATCCCGATCAACCTGTCGAAGTGCTGGCTGCCGATCTACGTCGTGCATTCTCCGGTATTGTGGCGGGTAACGTG
AAAGAAGTTGGCATCCGCGCTATTGAAGAGTTCGGTCCTTATAAAATCAACGGCGATAAGGAAATTATGCGTCGTATGGA
TGATCTGCTGCAGGGCTTTGTTGCCCAACATCGTATGAAGTTACCCGGTTCTGCTTATATTCCCTGTTACGAAATCCGCA
CTTAA

Upstream 100 bases:

>100_bases
TTTGCGTGGCAGATTCCGCGCGCAAGGTTGTTAAATGTCATAAGGCAGGGCTATTGTAATCAGCAGGGAATGACGACACT
CGTCCCATAAGGAGTTTTTC

Downstream 100 bases:

>100_bases
TCCCCTCCACCCGGCAACCTTCGTTGTCGGGCTTTCCCATTCAGCTGTTTAATTATCAATCCGTTTCATTTGTTATCTGA
ATGTTTCCACTGTTTCGCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 454; Mature: 454

Protein sequence:

>454_residues
MITHISPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNSGSLTDNSKELLSRFENFDINVLRRERGVKLELINPP
EDAFVDGRIIRSLQANLFAVLRDILFVYGQIHNTVRFPNLNLDNSVHITNLVFSILRNARALHVGEAPNMVVCWGGHSIN
ETEYLYARRVGNQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPSIIAAEPPNPLVNELIIMPDIEK
RLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPANKDQVLPLILTGPKESADYFRVLDEFVVHTLGESARRHYRIIID
DAAEVARQMKKSMPLVKENRRDTGDAYSFNWSMRITPDLQMPFEPTHENMANLKLYPDQPVEVLAADLRRAFSGIVAGNV
KEVGIRAIEEFGPYKINGDKEIMRRMDDLLQGFVAQHRMKLPGSAYIPCYEIRT

Sequences:

>Translated_454_residues
MITHISPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNSGSLTDNSKELLSRFENFDINVLRRERGVKLELINPP
EDAFVDGRIIRSLQANLFAVLRDILFVYGQIHNTVRFPNLNLDNSVHITNLVFSILRNARALHVGEAPNMVVCWGGHSIN
ETEYLYARRVGNQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPSIIAAEPPNPLVNELIIMPDIEK
RLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPANKDQVLPLILTGPKESADYFRVLDEFVVHTLGESARRHYRIIID
DAAEVARQMKKSMPLVKENRRDTGDAYSFNWSMRITPDLQMPFEPTHENMANLKLYPDQPVEVLAADLRRAFSGIVAGNV
KEVGIRAIEEFGPYKINGDKEIMRRMDDLLQGFVAQHRMKLPGSAYIPCYEIRT
>Mature_454_residues
MITHISPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNSGSLTDNSKELLSRFENFDINVLRRERGVKLELINPP
EDAFVDGRIIRSLQANLFAVLRDILFVYGQIHNTVRFPNLNLDNSVHITNLVFSILRNARALHVGEAPNMVVCWGGHSIN
ETEYLYARRVGNQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPSIIAAEPPNPLVNELIIMPDIEK
RLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPANKDQVLPLILTGPKESADYFRVLDEFVVHTLGESARRHYRIIID
DAAEVARQMKKSMPLVKENRRDTGDAYSFNWSMRITPDLQMPFEPTHENMANLKLYPDQPVEVLAADLRRAFSGIVAGNV
KEVGIRAIEEFGPYKINGDKEIMRRMDDLLQGFVAQHRMKLPGSAYIPCYEIRT

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LOG family [H]

Homologues:

Organism=Escherichia coli, GI1789159, Length=454, Percent_Identity=98.4581497797357, Blast_Score=921, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021826
- InterPro:   IPR005269 [H]

Pfam domain/function: PF11892 DUF3412; PF03641 Lysine_decarbox [H]

EC number: NA

Molecular weight: Translated: 51032; Mature: 51032

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITHISPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNSGSLTDNSKELLSRFEN
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHC
FDINVLRRERGVKLELINPPEDAFVDGRIIRSLQANLFAVLRDILFVYGQIHNTVRFPNL
CCEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCC
NLDNSVHITNLVFSILRNARALHVGEAPNMVVCWGGHSINETEYLYARRVGNQLGLRELN
CCCCCCHHHHHHHHHHHCCCEEEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEEE
ICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPSIIAAEPPNPLVNELIIMPDIEK
EECCCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCEEEECCCCHHHHHEEECCCHHH
RLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPANKDQVLPLILTGPKESADYFRVLD
HHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHH
EFVVHTLGESARRHYRIIIDDAAEVARQMKKSMPLVKENRRDTGDAYSFNWSMRITPDLQ
HHHHHHHHHHHCCEEEEEEECHHHHHHHHHHCCCCHHHCCCCCCCEEEEEEEEEECCCCC
MPFEPTHENMANLKLYPDQPVEVLAADLRRAFSGIVAGNVKEVGIRAIEEFGPYKINGDK
CCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEECCHH
EIMRRMDDLLQGFVAQHRMKLPGSAYIPCYEIRT
HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCC
>Mature Secondary Structure
MITHISPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNSGSLTDNSKELLSRFEN
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHC
FDINVLRRERGVKLELINPPEDAFVDGRIIRSLQANLFAVLRDILFVYGQIHNTVRFPNL
CCEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCC
NLDNSVHITNLVFSILRNARALHVGEAPNMVVCWGGHSINETEYLYARRVGNQLGLRELN
CCCCCCHHHHHHHHHHHCCCEEEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEEE
ICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPSIIAAEPPNPLVNELIIMPDIEK
EECCCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCEEEECCCCHHHHHEEECCCHHH
RLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPANKDQVLPLILTGPKESADYFRVLD
HHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHH
EFVVHTLGESARRHYRIIIDDAAEVARQMKKSMPLVKENRRDTGDAYSFNWSMRITPDLQ
HHHHHHHHHHHCCEEEEEEECHHHHHHHHHHCCCCHHHCCCCCCCEEEEEEEEEECCCCC
MPFEPTHENMANLKLYPDQPVEVLAADLRRAFSGIVAGNVKEVGIRAIEEFGPYKINGDK
CCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEECCHH
EIMRRMDDLLQGFVAQHRMKLPGSAYIPCYEIRT
HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]