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The map label for this gene is yadS [H]

Identifier: 218547613

GI number: 218547613

Start: 198722

End: 199351

Strand: Reverse

Name: yadS [H]

Synonym: EFER_0180

Alternate gene names: 218547613

Gene position: 199351-198722 (Counterclockwise)

Preceding gene: 218547614

Following gene: 218547610

Centisome position: 4.34

GC content: 50.95

Gene sequence:

>630_bases
ATGCTTGTCTATTGGTTGGATATTGTAGGCACAATAGCATTTGCCATCTCCGGCGTTATATTGGCCGGAAAAATACGGAT
GGACCCGTTTGGCGTGCTTGTTCTGGCTGTCGTAACTGCTATTGGTGGAGGCACCATCCGCGATATGGCGTTGGATAACG
GCCCCGTTTTTTGGGCGAAAGATCCCACCGATTTGGTCGTCGCTATGGTAACCAGCATGGTGACGTTATTTCTGGTTCGT
CATACCCGAAATGTTCCGCACTGGATTCTTCCAGTACTCGATGCCATAGGTTTGGCTGCGTTTGTCGGCATTGGCGTCAA
CAAAGCATTCGCAGCCGGAATAGGCCCCGTTGTGGCGGTAACAATGGGGGTGATTACCGGTGTCGGCGGTGGAATTATTC
GTGATGTACTGGCCCGCGAAATACCGCTAATCTTGCGCACAGAAATTTACGCTGTCGCCTGCATGATTGGCGGCATGGTA
CATGTCACAACACTTATCGCATTCAGCGTTCCTGCAGATACCGCCTGTCTGATGGGTATGGCGGTCACATTATTAGTACG
CCTTGCAGCAATACGCTGGAATTTGCGCCTGCCTACTTTTGCATTAAACGATGAACGACGTTGCGAGTAG

Upstream 100 bases:

>100_bases
GAGCAAGCCCGCGTATTATCCTCGCAGCAAAACAACTCTGTACTGCCCTTTCACAGGTTAATTAGAGTCTGCCTCGCAGG
CTCTCAGTGGGGATTCGACT

Downstream 100 bases:

>100_bases
TTAAACGAAAATGGCCCACAAATAACACATTGTGGGCCATAAGAAAGAATCGTGATTTGATCAGATGCTGAAAGAAGAGC
CGCAACCGCAGGTGCTTTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MLVYWLDIVGTIAFAISGVILAGKIRMDPFGVLVLAVVTAIGGGTIRDMALDNGPVFWAKDPTDLVVAMVTSMVTLFLVR
HTRNVPHWILPVLDAIGLAAFVGIGVNKAFAAGIGPVVAVTMGVITGVGGGIIRDVLAREIPLILRTEIYAVACMIGGMV
HVTTLIAFSVPADTACLMGMAVTLLVRLAAIRWNLRLPTFALNDERRCE

Sequences:

>Translated_209_residues
MLVYWLDIVGTIAFAISGVILAGKIRMDPFGVLVLAVVTAIGGGTIRDMALDNGPVFWAKDPTDLVVAMVTSMVTLFLVR
HTRNVPHWILPVLDAIGLAAFVGIGVNKAFAAGIGPVVAVTMGVITGVGGGIIRDVLAREIPLILRTEIYAVACMIGGMV
HVTTLIAFSVPADTACLMGMAVTLLVRLAAIRWNLRLPTFALNDERRCE
>Mature_209_residues
MLVYWLDIVGTIAFAISGVILAGKIRMDPFGVLVLAVVTAIGGGTIRDMALDNGPVFWAKDPTDLVVAMVTSMVTLFLVR
HTRNVPHWILPVLDAIGLAAFVGIGVNKAFAAGIGPVVAVTMGVITGVGGGIIRDVLAREIPLILRTEIYAVACMIGGMV
HVTTLIAFSVPADTACLMGMAVTLLVRLAAIRWNLRLPTFALNDERRCE

Specific function: Unknown

COG id: COG2860

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0126 family [H]

Homologues:

Organism=Escherichia coli, GI1786352, Length=207, Percent_Identity=77.7777777777778, Blast_Score=298, Evalue=2e-82,
Organism=Escherichia coli, GI87082304, Length=151, Percent_Identity=41.7218543046358, Blast_Score=110, Evalue=7e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005115 [H]

Pfam domain/function: PF03458 UPF0126 [H]

EC number: NA

Molecular weight: Translated: 22164; Mature: 22164

Theoretical pI: Translated: 8.08; Mature: 8.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVYWLDIVGTIAFAISGVILAGKIRMDPFGVLVLAVVTAIGGGTIRDMALDNGPVFWAK
CEEEHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHCCCCHHHHCCCCCCEEEEC
DPTDLVVAMVTSMVTLFLVRHTRNVPHWILPVLDAIGLAAFVGIGVNKAFAAGIGPVVAV
CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHH
TMGVITGVGGGIIRDVLAREIPLILRTEIYAVACMIGGMVHVTTLIAFSVPADTACLMGM
HHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHH
AVTLLVRLAAIRWNLRLPTFALNDERRCE
HHHHHHHHHHHHHCCCCCEEECCCCCCCC
>Mature Secondary Structure
MLVYWLDIVGTIAFAISGVILAGKIRMDPFGVLVLAVVTAIGGGTIRDMALDNGPVFWAK
CEEEHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHCCCCHHHHCCCCCCEEEEC
DPTDLVVAMVTSMVTLFLVRHTRNVPHWILPVLDAIGLAAFVGIGVNKAFAAGIGPVVAV
CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHH
TMGVITGVGGGIIRDVLAREIPLILRTEIYAVACMIGGMVHVTTLIAFSVPADTACLMGM
HHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHH
AVTLLVRLAAIRWNLRLPTFALNDERRCE
HHHHHHHHHHHHHCCCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]