Click here to switch to the map view.

The map label for this gene is citD

Identifier: 218547472

GI number: 218547472

Start: 33312

End: 33605

Strand: Direct

Name: citD

Synonym: EFER_0033

Alternate gene names: 218547472

Gene position: 33312-33605 (Clockwise)

Preceding gene: 218547471

Following gene: 218547473

Centisome position: 0.73

GC content: 53.74

Gene sequence:

>294_bases
ATGGAAATTATTAAAGACGCCCTGGCCGGCACGCTGGAATCCAGCGATGTCATGGTCAGAATTGGCCCTTGCGATGAACC
AGGAATACACCTGGAACTGGAGAGCCTGGTGAAACAACAATTTGGCAACGCCATTGAACGCGTTGCCCGCGAAACCCTGG
CGAAGCTGGGCGTGGAACGTGCACACGTAGTGATTGATGACAAAGGTGCGCTGGAGTGTGTGTTACGTGCTCGCGTACAG
GCAGCGGTAATGCGTGCTGCAGAACAAACGGAAATTCAGTGGGGGGCAATATGA

Upstream 100 bases:

>100_bases
CGCCGCTGGTTCCTTCTTCAACACTCGCTTTTTTGACGCGTCTGGCGGCCGGTAATACGGAAACGGCATGACATTTTCTT
CGTGAATAAGGAAAGAACAG

Downstream 100 bases:

>100_bases
AACCACGTCGCAGTATGTTGTTTATCCCGGGTGCAAATGCCGCCATGTTAAGTACTTCCTTCGTTTATGGCGCAGATGCC
GTCATGTTCGATCTGGAAGA

Product: citrate lyase subunit gamma

Products: acetate; oxaloacetate

Alternate protein names: Citrate lyase gamma chain

Number of amino acids: Translated: 97; Mature: 97

Protein sequence:

>97_residues
MEIIKDALAGTLESSDVMVRIGPCDEPGIHLELESLVKQQFGNAIERVARETLAKLGVERAHVVIDDKGALECVLRARVQ
AAVMRAAEQTEIQWGAI

Sequences:

>Translated_97_residues
MEIIKDALAGTLESSDVMVRIGPCDEPGIHLELESLVKQQFGNAIERVARETLAKLGVERAHVVIDDKGALECVLRARVQ
AAVMRAAEQTEIQWGAI
>Mature_97_residues
MEIIKDALAGTLESSDVMVRIGPCDEPGIHLELESLVKQQFGNAIERVARETLAKLGVERAHVVIDDKGALECVLRARVQ
AAVMRAAEQTEIQWGAI

Specific function: Covalent carrier of the coenzyme of citrate lyase

COG id: COG3052

COG function: function code C; Citrate lyase, gamma subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitD family

Homologues:

Organism=Escherichia coli, GI1786834, Length=94, Percent_Identity=45.7446808510638, Blast_Score=88, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CITD_ESCF3 (B7LVP5)

Other databases:

- EMBL:   CU928158
- RefSeq:   YP_002381263.1
- EnsemblBacteria:   EBESCT00000123143
- GeneID:   7120896
- GenomeReviews:   CU928158_GR
- KEGG:   efe:EFER_0033
- GeneTree:   EBGT00050000011707
- HOGENOM:   HBG359308
- ProtClustDB:   PRK13253
- BioCyc:   EFER585054:EFER_0033-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00805
- InterPro:   IPR006495
- InterPro:   IPR009662
- PIRSF:   PIRSF002736
- ProDom:   PD015389
- TIGRFAMs:   TIGR01608

Pfam domain/function: PF06857 MdcD

EC number: 4.1.3.6

Molecular weight: Translated: 10579; Mature: 10579

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIIKDALAGTLESSDVMVRIGPCDEPGIHLELESLVKQQFGNAIERVARETLAKLGVER
CHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCC
AHVVIDDKGALECVLRARVQAAVMRAAEQTEIQWGAI
EEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MEIIKDALAGTLESSDVMVRIGPCDEPGIHLELESLVKQQFGNAIERVARETLAKLGVER
CHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCC
AHVVIDDKGALECVLRARVQAAVMRAAEQTEIQWGAI
EEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: citrate

Specific reaction: citrate = acetate + oxaloacetate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA