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The map label for this gene is nifL [H]

Identifier: 218532671

GI number: 218532671

Start: 5073218

End: 5073694

Strand: Reverse

Name: nifL [H]

Synonym: Mchl_4785

Alternate gene names: 218532671

Gene position: 5073694-5073218 (Counterclockwise)

Preceding gene: 218532673

Following gene: 218532669

Centisome position: 87.81

GC content: 65.83

Gene sequence:

>477_bases
ATGACCATCGTGGAACTTGTGAAAATGCTGGCTGAGCCGCTCGATGTCGCGGTCCTGCTCACCGACATCGATCTGGAGCG
GCCAGGGCCGACAATCCTGTACGCCAATCCTGCGTTTGCCCGCATGAGCGGCTACGCGATCTCCCAGGTGCTTGGGGGCT
CGCCCCGCCTGCTGCAGGGCTCTGGCACTAGCCGAGAGGCAACCCGCATGGTTGCCCGCAGCCTGCGCACGGACGGCCGC
TTTCGGGGGGTCCTGCAGAACTACCGCCCGTCGGGCGAAGCGTACCTGTGCGAGATCGACGTGCGTGCGATCCTGGATCG
TGCGGGAAGCCCCCAAGCCTTCATCGCCTTCGAGCGGGAGGTGGTACGCCGCAGAGGTCGCCCGTCGCAGAACACTGCAG
GCCGCTACCGACCCCTGACACAGACCAGCTTGGACTGCGCCACGCTGCTGAGCGTTGCAACAGCGCTGTTCGCCTGA

Upstream 100 bases:

>100_bases
TTCCTGAATATGCTGCCGCGCACCCCGTCAAGCGGCGTTTCCACGTGAGGAACCGGTTAACACTTTCTGATTTATGCGTT
CTCACGGAGGGCATGCGGCC

Downstream 100 bases:

>100_bases
AGCAAACCAGCCTCCCTTACCCAGAGCAGCGCAGGATGACATCCGCGCCTCAGGCCACTTCAATGCGGGGCGTCAAGCCT
TCAGAGACGGCCTTGACCTG

Product: PAS sensor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MTIVELVKMLAEPLDVAVLLTDIDLERPGPTILYANPAFARMSGYAISQVLGGSPRLLQGSGTSREATRMVARSLRTDGR
FRGVLQNYRPSGEAYLCEIDVRAILDRAGSPQAFIAFEREVVRRRGRPSQNTAGRYRPLTQTSLDCATLLSVATALFA

Sequences:

>Translated_158_residues
MTIVELVKMLAEPLDVAVLLTDIDLERPGPTILYANPAFARMSGYAISQVLGGSPRLLQGSGTSREATRMVARSLRTDGR
FRGVLQNYRPSGEAYLCEIDVRAILDRAGSPQAFIAFEREVVRRRGRPSQNTAGRYRPLTQTSLDCATLLSVATALFA
>Mature_157_residues
TIVELVKMLAEPLDVAVLLTDIDLERPGPTILYANPAFARMSGYAISQVLGGSPRLLQGSGTSREATRMVARSLRTDGRF
RGVLQNYRPSGEAYLCEIDVRAILDRAGSPQAFIAFEREVVRRRGRPSQNTAGRYRPLTQTSLDCATLLSVATALFA

Specific function: Required for the inhibition of nifA activity in response to oxygen and low level of fixed nitrogen [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR014285
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 17287; Mature: 17156

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS50112 PAS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIVELVKMLAEPLDVAVLLTDIDLERPGPTILYANPAFARMSGYAISQVLGGSPRLLQG
CCHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEC
SGTSREATRMVARSLRTDGRFRGVLQNYRPSGEAYLCEIDVRAILDRAGSPQAFIAFERE
CCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEEHHHHHHCCCCCCCEEHHHHHH
VVRRRGRPSQNTAGRYRPLTQTSLDCATLLSVATALFA
HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TIVELVKMLAEPLDVAVLLTDIDLERPGPTILYANPAFARMSGYAISQVLGGSPRLLQG
CHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEC
SGTSREATRMVARSLRTDGRFRGVLQNYRPSGEAYLCEIDVRAILDRAGSPQAFIAFERE
CCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEEHHHHHHCCCCCCCEEHHHHHH
VVRRRGRPSQNTAGRYRPLTQTSLDCATLLSVATALFA
HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3027503; 2838726; 1879702; 8481091 [H]