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The map label for this gene is yngJ [H]

Identifier: 218532519

GI number: 218532519

Start: 4912046

End: 4913272

Strand: Reverse

Name: yngJ [H]

Synonym: Mchl_4633

Alternate gene names: 218532519

Gene position: 4913272-4912046 (Counterclockwise)

Preceding gene: 218532522

Following gene: 218532518

Centisome position: 85.04

GC content: 70.17

Gene sequence:

>1227_bases
ATGGCCAAGCCAGAATTTAAGGCGCCGCGCCCGCCGGAGCTGCTCTCGCCCTGGCGCACCGACCGGCGCGCTGCGCTCCA
GGAGGAGGCCCGGGCGTTTGCCCGCGACGTGATCCTGCCGCTGGCCGACGAACTCGACCCGCAGAAGGGCGAGATGCCCC
GCTCGCTCATCGACGCGATGGCGCAGAAAGGCTGGTTCGGCATCACCATCCCCGCCGAGTATGGCGGGATGGGGCTGGGC
GTGTTCGAGTACTGCCTGATTTCCGAAGAACTCGCCCGCGCGTGGCTCTCCACCGGCTCGATCCTGGCCCGCGGCCAGGG
TCTCGGCACCCAGACGCTCGATGATGAAAGCCGCCGGGCGCTGCTGGCCAAATCCGCCAAGGGACAGTGGATCGGCTCGA
TCGCACTCTCCGAACCCACCGCCGGCTCGGATCTGGCCGGCGTGCAGACCCGTGCGGTGCGCGAAGGCGACGAATGGGTG
CTCACCGGCACCAAGCGCTGGGCCGGCTTCGCTCAAGGCGCCGACTTCATCGAGGTGCTGGCCCGCGTGCGCGACCCCGA
GCCCGGCGAGCCGCGCTCGGCCGGCCTCGAGCCCTTCCTCGTGGTCAAGGAGCCCGGCACCTTCCCGAAGGGCATGACCG
GCACTGTCATCGACAAGATCGGCTATCACGGCTTCCTCACCTTCGAACTCAAGCTCGACGGCGTGCGCGTACCCGAGCGC
GACCGGCTCACCGGCCTCTACGGCGACGAGGGGGCGGATGCGGATTCCGGCGGCTTCGCCTCGGTGCAGCGCGGCCTCAA
CATCGCCCGCGTCCACACCGCCGCCCGCGCGGTCGGCGTGGCCCGCGCCGCGGTGGAGGATTGCACCGCCTACCTTCAGG
AGCGCGAGCAGTTCGGCCAGCCGATCGGCCAGTTCCAGGCCCTGCGCTTCGCACTCGCCGACATGGCCGCCGAGGTGGCC
CAAGCCCGCGCCTACTGGCAACAGGTCGCCCACCTCCTCGACGAGGGCCTGCCCGCCGAGAGCGAATCGGCTCAAGTGAA
GCTGCTGGCCACCGAGATGGCGGTGCGGGTGACGAACCAAGCGATGCAGCTGCACGGCGGCAACGGCTACACCACCGAGC
GGCGGGTCGAGCGCTATTGGCGCGATGCGCGCCTCACCACGATCTTCGAGGGCACCAGCGAGATCCAGCGCCGCATCATC
AGCGACCGGATGCTGCCGCGGGGATAG

Upstream 100 bases:

>100_bases
CAGCGACCCCGCGCAGGCCTTCCGCGGGGCCCGCGCGAACGTTTTGCCAGCTTGAGCGTTCGGCTCGGACGAACAACGGC
AAAAAAGACGCGGAGGAACC

Downstream 100 bases:

>100_bases
CCCCTTCTTCCCAACCACCGCCTCACCCTGAGGTGCTGAGCGAAGCGGAGCCTCGAAGGGTCCTCCAGCGGCCATCGCGA
TCCCTGGAACACCCTTCGAG

Product: acyl-CoA dehydrogenase domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 407

Protein sequence:

>408_residues
MAKPEFKAPRPPELLSPWRTDRRAALQEEARAFARDVILPLADELDPQKGEMPRSLIDAMAQKGWFGITIPAEYGGMGLG
VFEYCLISEELARAWLSTGSILARGQGLGTQTLDDESRRALLAKSAKGQWIGSIALSEPTAGSDLAGVQTRAVREGDEWV
LTGTKRWAGFAQGADFIEVLARVRDPEPGEPRSAGLEPFLVVKEPGTFPKGMTGTVIDKIGYHGFLTFELKLDGVRVPER
DRLTGLYGDEGADADSGGFASVQRGLNIARVHTAARAVGVARAAVEDCTAYLQEREQFGQPIGQFQALRFALADMAAEVA
QARAYWQQVAHLLDEGLPAESESAQVKLLATEMAVRVTNQAMQLHGGNGYTTERRVERYWRDARLTTIFEGTSEIQRRII
SDRMLPRG

Sequences:

>Translated_408_residues
MAKPEFKAPRPPELLSPWRTDRRAALQEEARAFARDVILPLADELDPQKGEMPRSLIDAMAQKGWFGITIPAEYGGMGLG
VFEYCLISEELARAWLSTGSILARGQGLGTQTLDDESRRALLAKSAKGQWIGSIALSEPTAGSDLAGVQTRAVREGDEWV
LTGTKRWAGFAQGADFIEVLARVRDPEPGEPRSAGLEPFLVVKEPGTFPKGMTGTVIDKIGYHGFLTFELKLDGVRVPER
DRLTGLYGDEGADADSGGFASVQRGLNIARVHTAARAVGVARAAVEDCTAYLQEREQFGQPIGQFQALRFALADMAAEVA
QARAYWQQVAHLLDEGLPAESESAQVKLLATEMAVRVTNQAMQLHGGNGYTTERRVERYWRDARLTTIFEGTSEIQRRII
SDRMLPRG
>Mature_407_residues
AKPEFKAPRPPELLSPWRTDRRAALQEEARAFARDVILPLADELDPQKGEMPRSLIDAMAQKGWFGITIPAEYGGMGLGV
FEYCLISEELARAWLSTGSILARGQGLGTQTLDDESRRALLAKSAKGQWIGSIALSEPTAGSDLAGVQTRAVREGDEWVL
TGTKRWAGFAQGADFIEVLARVRDPEPGEPRSAGLEPFLVVKEPGTFPKGMTGTVIDKIGYHGFLTFELKLDGVRVPERD
RLTGLYGDEGADADSGGFASVQRGLNIARVHTAARAVGVARAAVEDCTAYLQEREQFGQPIGQFQALRFALADMAAEVAQ
ARAYWQQVAHLLDEGLPAESESAQVKLLATEMAVRVTNQAMQLHGGNGYTTERRVERYWRDARLTTIFEGTSEIQRRIIS
DRMLPRG

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4557231, Length=386, Percent_Identity=33.6787564766839, Blast_Score=200, Evalue=2e-51,
Organism=Homo sapiens, GI187960098, Length=386, Percent_Identity=33.6787564766839, Blast_Score=200, Evalue=2e-51,
Organism=Homo sapiens, GI4557233, Length=384, Percent_Identity=34.6354166666667, Blast_Score=199, Evalue=4e-51,
Organism=Homo sapiens, GI4501859, Length=389, Percent_Identity=32.6478149100257, Blast_Score=185, Evalue=5e-47,
Organism=Homo sapiens, GI226958412, Length=392, Percent_Identity=31.8877551020408, Blast_Score=185, Evalue=7e-47,
Organism=Homo sapiens, GI226958414, Length=367, Percent_Identity=32.1525885558583, Blast_Score=184, Evalue=1e-46,
Organism=Homo sapiens, GI7656849, Length=396, Percent_Identity=31.3131313131313, Blast_Score=161, Evalue=1e-39,
Organism=Homo sapiens, GI4501857, Length=387, Percent_Identity=26.0981912144703, Blast_Score=143, Evalue=3e-34,
Organism=Homo sapiens, GI21361497, Length=367, Percent_Identity=29.9727520435967, Blast_Score=142, Evalue=4e-34,
Organism=Homo sapiens, GI4557235, Length=398, Percent_Identity=30.1507537688442, Blast_Score=139, Evalue=4e-33,
Organism=Homo sapiens, GI76496475, Length=398, Percent_Identity=30.1507537688442, Blast_Score=139, Evalue=5e-33,
Organism=Homo sapiens, GI4503943, Length=410, Percent_Identity=27.3170731707317, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI7669494, Length=400, Percent_Identity=27, Blast_Score=105, Evalue=7e-23,
Organism=Homo sapiens, GI48976061, Length=416, Percent_Identity=24.5192307692308, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI211971008, Length=416, Percent_Identity=24.5192307692308, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI38505218, Length=398, Percent_Identity=20.6030150753769, Blast_Score=70, Evalue=4e-12,
Organism=Escherichia coli, GI87081958, Length=365, Percent_Identity=30.6849315068493, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1786223, Length=346, Percent_Identity=27.7456647398844, Blast_Score=124, Evalue=8e-30,
Organism=Caenorhabditis elegans, GI17538396, Length=386, Percent_Identity=33.419689119171, Blast_Score=187, Evalue=8e-48,
Organism=Caenorhabditis elegans, GI17570075, Length=391, Percent_Identity=31.9693094629156, Blast_Score=183, Evalue=2e-46,
Organism=Caenorhabditis elegans, GI17508101, Length=400, Percent_Identity=33, Blast_Score=182, Evalue=4e-46,
Organism=Caenorhabditis elegans, GI17534899, Length=385, Percent_Identity=31.6883116883117, Blast_Score=178, Evalue=5e-45,
Organism=Caenorhabditis elegans, GI17569725, Length=385, Percent_Identity=32.4675324675325, Blast_Score=174, Evalue=5e-44,
Organism=Caenorhabditis elegans, GI17506239, Length=397, Percent_Identity=29.7229219143577, Blast_Score=167, Evalue=8e-42,
Organism=Caenorhabditis elegans, GI17533517, Length=386, Percent_Identity=30.0518134715026, Blast_Score=155, Evalue=4e-38,
Organism=Caenorhabditis elegans, GI71985184, Length=364, Percent_Identity=27.7472527472527, Blast_Score=136, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI71990804, Length=305, Percent_Identity=31.1475409836066, Blast_Score=129, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI17505929, Length=362, Percent_Identity=28.4530386740331, Blast_Score=114, Evalue=7e-26,
Organism=Caenorhabditis elegans, GI17551932, Length=384, Percent_Identity=27.0833333333333, Blast_Score=111, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI17534353, Length=399, Percent_Identity=26.0651629072682, Blast_Score=105, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI71982178, Length=294, Percent_Identity=29.2517006802721, Blast_Score=105, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI71985192, Length=299, Percent_Identity=25.0836120401338, Blast_Score=98, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17562446, Length=383, Percent_Identity=26.3707571801567, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI32563615, Length=246, Percent_Identity=28.8617886178862, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI86563381, Length=285, Percent_Identity=30.1754385964912, Blast_Score=82, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI86563383, Length=285, Percent_Identity=30.1754385964912, Blast_Score=82, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24660351, Length=391, Percent_Identity=36.0613810741688, Blast_Score=207, Evalue=1e-53,
Organism=Drosophila melanogaster, GI21356377, Length=384, Percent_Identity=33.3333333333333, Blast_Score=188, Evalue=4e-48,
Organism=Drosophila melanogaster, GI24646207, Length=387, Percent_Identity=33.5917312661499, Blast_Score=176, Evalue=4e-44,
Organism=Drosophila melanogaster, GI21355753, Length=387, Percent_Identity=32.2997416020672, Blast_Score=172, Evalue=3e-43,
Organism=Drosophila melanogaster, GI24666513, Length=397, Percent_Identity=30.7304785894207, Blast_Score=169, Evalue=3e-42,
Organism=Drosophila melanogaster, GI281363737, Length=401, Percent_Identity=28.1795511221945, Blast_Score=133, Evalue=2e-31,
Organism=Drosophila melanogaster, GI19920834, Length=409, Percent_Identity=28.1173594132029, Blast_Score=113, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 44686; Mature: 44555

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: PS00072 ACYL_COA_DH_1 ; PS00073 ACYL_COA_DH_2 ; PS00697 DNA_LIGASE_A1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKPEFKAPRPPELLSPWRTDRRAALQEEARAFARDVILPLADELDPQKGEMPRSLIDAM
CCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
AQKGWFGITIPAEYGGMGLGVFEYCLISEELARAWLSTGSILARGQGLGTQTLDDESRRA
HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHH
LLAKSAKGQWIGSIALSEPTAGSDLAGVQTRAVREGDEWVLTGTKRWAGFAQGADFIEVL
HHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHCCCCCEEEECCHHHHCHHCCHHHHHHH
ARVRDPEPGEPRSAGLEPFLVVKEPGTFPKGMTGTVIDKIGYHGFLTFELKLDGVRVPER
HHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHCCCCEEEEEEEEECCCCCCCC
DRLTGLYGDEGADADSGGFASVQRGLNIARVHTAARAVGVARAAVEDCTAYLQEREQFGQ
CCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PIGQFQALRFALADMAAEVAQARAYWQQVAHLLDEGLPAESESAQVKLLATEMAVRVTNQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHH
AMQLHGGNGYTTERRVERYWRDARLTTIFEGTSEIQRRIISDRMLPRG
HHEEECCCCCCHHHHHHHHHHHCHHEEEECCHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AKPEFKAPRPPELLSPWRTDRRAALQEEARAFARDVILPLADELDPQKGEMPRSLIDAM
CCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
AQKGWFGITIPAEYGGMGLGVFEYCLISEELARAWLSTGSILARGQGLGTQTLDDESRRA
HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHH
LLAKSAKGQWIGSIALSEPTAGSDLAGVQTRAVREGDEWVLTGTKRWAGFAQGADFIEVL
HHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHCCCCCEEEECCHHHHCHHCCHHHHHHH
ARVRDPEPGEPRSAGLEPFLVVKEPGTFPKGMTGTVIDKIGYHGFLTFELKLDGVRVPER
HHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHCCCCEEEEEEEEECCCCCCCC
DRLTGLYGDEGADADSGGFASVQRGLNIARVHTAARAVGVARAAVEDCTAYLQEREQFGQ
CCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PIGQFQALRFALADMAAEVAQARAYWQQVAHLLDEGLPAESESAQVKLLATEMAVRVTNQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHH
AMQLHGGNGYTTERRVERYWRDARLTTIFEGTSEIQRRIISDRMLPRG
HHEEECCCCCCHHHHHHHHHHHCHHEEEECCHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387222; 9384377 [H]