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The map label for this gene is ddpC [H]

Identifier: 218531961

GI number: 218531961

Start: 4265951

End: 4266874

Strand: Reverse

Name: ddpC [H]

Synonym: Mchl_4049

Alternate gene names: 218531961

Gene position: 4266874-4265951 (Counterclockwise)

Preceding gene: 218531962

Following gene: 218531960

Centisome position: 73.85

GC content: 69.81

Gene sequence:

>924_bases
ATGGATGCCGTGGATTCTTCCCTGGCGCTGGTTCCGCCCCGCGTCGATGTCACGGCCTCGCGCTCCATCGGCCGGCGCAT
CCTCGGGCGCGCCGCCCGTTCCGGGGGCTTTCGCGTCGGCTTCGTCGTGCTCGCCCTCCTCGTGCTCGCCGCCGCGCTCT
ACCCGGAACTCAGCGGCATCGACCCGGCGATGCGGGACATCCGGGCGCGCCTGCTGCCGCCGCTGTTCCTCGGCGACAAG
TGGAGCTGGGTGCACCCGCTCGGCACCGACCAGATCGGCCGCGACATGCTGGTGCGCTGCCTCGTGGGCCTGCGCTACTC
GCTGCTGATCGGCGTGGCCTCGGTCGCCGTGACCGTCATCATCGGCTCCGCGCTCGGCACCGTCGCCGGCTATTTCGGCG
GGCGCACCGACACGGTGATCATGCGGATCACCGACGCGCAGCTCTCGATCCCGATGATCATCCTGGCGATCGCCGTGCTC
GGCGCCGACCGCCCGACCATCCCGGCGATCATCCTCGTGCTCGGCCTGTCGAACTGGCCGGTCTATGCCCGCGTCATGCG
CTCGATGGTGATGGCCGAGCGCGGGCGCGAATACGTGCGCGCCGCGCAGGTCTCGGGTGCCACCCATCCGCGCATCATCC
TCACGCTGCTCGTGCCGCTGTTGGTGCCGCCGCTGCTCTTCACCTCGGTGCTCGATGTCGCGCGGATGATGATCTTCGAA
TCGACGCTCGGCTTCCTCGGCCTCGGCGTGCAGCCGCCGACGCCGACCTTCGGCAGCATCATCGCCGACGGGCGCAAATA
CCTGCTCAACGCGTGGTGGATCGCCACCATGCCGGGCGTGTTCCTATGCCTCACGCTCACCGGCATCAACCTGATCGGCG
CCGCCTTCGAGCGTGCCCGCAACTCGATCCACGGGGGCGCCTGA

Upstream 100 bases:

>100_bases
TGATCCAGGGCATCGCGATCGTCACCAGCGCGATCTTCGTCCTCATCAACATCCTCGTCGATCTCGCGGCGACCACCATC
GATCCGAGGCTCGAATACTG

Downstream 100 bases:

>100_bases
TGGACCCGGTGCTCTCCGTCCGCGACCTCTCCGTTGCCCTCACCCTCCCCGGGCGTGAGCGAACCATTCTCGACGGGATC
AGCTTCGACGTCGCCCCGCG

Product: binding-protein-dependent transporters inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MDAVDSSLALVPPRVDVTASRSIGRRILGRAARSGGFRVGFVVLALLVLAAALYPELSGIDPAMRDIRARLLPPLFLGDK
WSWVHPLGTDQIGRDMLVRCLVGLRYSLLIGVASVAVTVIIGSALGTVAGYFGGRTDTVIMRITDAQLSIPMIILAIAVL
GADRPTIPAIILVLGLSNWPVYARVMRSMVMAERGREYVRAAQVSGATHPRIILTLLVPLLVPPLLFTSVLDVARMMIFE
STLGFLGLGVQPPTPTFGSIIADGRKYLLNAWWIATMPGVFLCLTLTGINLIGAAFERARNSIHGGA

Sequences:

>Translated_307_residues
MDAVDSSLALVPPRVDVTASRSIGRRILGRAARSGGFRVGFVVLALLVLAAALYPELSGIDPAMRDIRARLLPPLFLGDK
WSWVHPLGTDQIGRDMLVRCLVGLRYSLLIGVASVAVTVIIGSALGTVAGYFGGRTDTVIMRITDAQLSIPMIILAIAVL
GADRPTIPAIILVLGLSNWPVYARVMRSMVMAERGREYVRAAQVSGATHPRIILTLLVPLLVPPLLFTSVLDVARMMIFE
STLGFLGLGVQPPTPTFGSIIADGRKYLLNAWWIATMPGVFLCLTLTGINLIGAAFERARNSIHGGA
>Mature_307_residues
MDAVDSSLALVPPRVDVTASRSIGRRILGRAARSGGFRVGFVVLALLVLAAALYPELSGIDPAMRDIRARLLPPLFLGDK
WSWVHPLGTDQIGRDMLVRCLVGLRYSLLIGVASVAVTVIIGSALGTVAGYFGGRTDTVIMRITDAQLSIPMIILAIAVL
GADRPTIPAIILVLGLSNWPVYARVMRSMVMAERGREYVRAAQVSGATHPRIILTLLVPLLVPPLLFTSVLDVARMMIFE
STLGFLGLGVQPPTPTFGSIIADGRKYLLNAWWIATMPGVFLCLTLTGINLIGAAFERARNSIHGGA

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=252, Percent_Identity=38.4920634920635, Blast_Score=177, Evalue=8e-46,
Organism=Escherichia coli, GI1789889, Length=241, Percent_Identity=35.6846473029046, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1789964, Length=239, Percent_Identity=37.6569037656904, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1787054, Length=209, Percent_Identity=33.4928229665072, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1787498, Length=215, Percent_Identity=34.8837209302326, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787549, Length=246, Percent_Identity=32.1138211382114, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1788505, Length=187, Percent_Identity=29.4117647058824, Blast_Score=81, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32860; Mature: 32860

Theoretical pI: Translated: 10.92; Mature: 10.92

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAVDSSLALVPPRVDVTASRSIGRRILGRAARSGGFRVGFVVLALLVLAAALYPELSGI
CCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
DPAMRDIRARLLPPLFLGDKWSWVHPLGTDQIGRDMLVRCLVGLRYSLLIGVASVAVTVI
CHHHHHHHHHHCCCHHCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGSALGTVAGYFGGRTDTVIMRITDAQLSIPMIILAIAVLGADRPTIPAIILVLGLSNWP
HHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC
VYARVMRSMVMAERGREYVRAAQVSGATHPRIILTLLVPLLVPPLLFTSVLDVARMMIFE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
STLGFLGLGVQPPTPTFGSIIADGRKYLLNAWWIATMPGVFLCLTLTGINLIGAAFERAR
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NSIHGGA
HHCCCCC
>Mature Secondary Structure
MDAVDSSLALVPPRVDVTASRSIGRRILGRAARSGGFRVGFVVLALLVLAAALYPELSGI
CCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
DPAMRDIRARLLPPLFLGDKWSWVHPLGTDQIGRDMLVRCLVGLRYSLLIGVASVAVTVI
CHHHHHHHHHHCCCHHCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGSALGTVAGYFGGRTDTVIMRITDAQLSIPMIILAIAVLGADRPTIPAIILVLGLSNWP
HHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC
VYARVMRSMVMAERGREYVRAAQVSGATHPRIILTLLVPLLVPPLLFTSVLDVARMMIFE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
STLGFLGLGVQPPTPTFGSIIADGRKYLLNAWWIATMPGVFLCLTLTGINLIGAAFERAR
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NSIHGGA
HHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]