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The map label for this gene is ycfQ [H]

Identifier: 218531658

GI number: 218531658

Start: 3933819

End: 3934373

Strand: Reverse

Name: ycfQ [H]

Synonym: Mchl_3727

Alternate gene names: 218531658

Gene position: 3934373-3933819 (Counterclockwise)

Preceding gene: 218531660

Following gene: 218531654

Centisome position: 68.09

GC content: 73.87

Gene sequence:

>555_bases
ATGCACGTGTTCTGGCGCAAGGGCTTTGCGGCCACGGCCATTTCCGAGCTGACCGCGGCGATGGGGATCGGCTCGCCGAG
CCTCTACGCGGCGTTCGGCTCGAAGGAGGGGCTCTACACGGAGGCCCTGCGCCACTACCGCGAGCGATACGGGGCGCATG
TCTGGGGCAACTTCGATGCGGCCCCGACCGCGCGCGCGGCCGTCGAATCCCTGCTGATGGACACGGCCGCCGCCCTGACG
CAGGTCTGCGCGCCCGAGGCGCCGCGCGGCTGCATGGTGACGCTCTCGGCCGTCGGCGGCGAGGGCCATGCGGAGCTCGG
CGCCTGCGTGCGGGCCGCGCGCGCCCTCGGATTCGAGCGCGTCGTGGCGCGGCTCAGCCGCGCGGCGGCGGAGGGCGAAT
TCGGTGCCGCGGTCGATCTCCCCGCCCTCGCCCGCTTCGTCATGACCGTGCAGGGTGGGATGTCGCTTCAGGCCCGCGAC
GGCGCGAGCCGAGCCGAGCTGGAGGCGGTCGCCCGTCTGACGATGGCGGGATGGGACGCCAGGGTCGCCGGTTGA

Upstream 100 bases:

>100_bases
ACCCGGTCCCTCCCCCGGCGCCGCACCACCGAGCTGCGGCCCAACCCGTGGCCGCGGCCGGCCGCGTGCCTTCGACCGGG
ACGCGGCGCTGACCCAGGCC

Downstream 100 bases:

>100_bases
TCGCGCGCGGCCCTCAGGCCGCCTCGTCCTCGGGGATCACATCGACCTCGACGGTGAGCTTCTGCTCCCCGGCGGAGGCG
ACCATGCCATCAATGGGGGC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MHVFWRKGFAATAISELTAAMGIGSPSLYAAFGSKEGLYTEALRHYRERYGAHVWGNFDAAPTARAAVESLLMDTAAALT
QVCAPEAPRGCMVTLSAVGGEGHAELGACVRAARALGFERVVARLSRAAAEGEFGAAVDLPALARFVMTVQGGMSLQARD
GASRAELEAVARLTMAGWDARVAG

Sequences:

>Translated_184_residues
MHVFWRKGFAATAISELTAAMGIGSPSLYAAFGSKEGLYTEALRHYRERYGAHVWGNFDAAPTARAAVESLLMDTAAALT
QVCAPEAPRGCMVTLSAVGGEGHAELGACVRAARALGFERVVARLSRAAAEGEFGAAVDLPALARFVMTVQGGMSLQARD
GASRAELEAVARLTMAGWDARVAG
>Mature_184_residues
MHVFWRKGFAATAISELTAAMGIGSPSLYAAFGSKEGLYTEALRHYRERYGAHVWGNFDAAPTARAAVESLLMDTAAALT
QVCAPEAPRGCMVTLSAVGGEGHAELGACVRAARALGFERVVARLSRAAAEGEFGAAVDLPALARFVMTVQGGMSLQARD
GASRAELEAVARLTMAGWDARVAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=181, Percent_Identity=30.939226519337, Blast_Score=85, Evalue=3e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 19203; Mature: 19203

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHVFWRKGFAATAISELTAAMGIGSPSLYAAFGSKEGLYTEALRHYRERYGAHVWGNFDA
CCCEECCCHHHHHHHHHHHHHCCCCCHHEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCC
APTARAAVESLLMDTAAALTQVCAPEAPRGCMVTLSAVGGEGHAELGACVRAARALGFER
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHH
VVARLSRAAAEGEFGAAVDLPALARFVMTVQGGMSLQARDGASRAELEAVARLTMAGWDA
HHHHHHHHHCCCCCCCEECHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHCCCC
RVAG
CCCC
>Mature Secondary Structure
MHVFWRKGFAATAISELTAAMGIGSPSLYAAFGSKEGLYTEALRHYRERYGAHVWGNFDA
CCCEECCCHHHHHHHHHHHHHCCCCCHHEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCC
APTARAAVESLLMDTAAALTQVCAPEAPRGCMVTLSAVGGEGHAELGACVRAARALGFER
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHH
VVARLSRAAAEGEFGAAVDLPALARFVMTVQGGMSLQARDGASRAELEAVARLTMAGWDA
HHHHHHHHHCCCCCCCEECHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHCCCC
RVAG
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]