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The map label for this gene is rpoZ

Identifier: 218531453

GI number: 218531453

Start: 3707407

End: 3707817

Strand: Reverse

Name: rpoZ

Synonym: Mchl_3521

Alternate gene names: 218531453

Gene position: 3707817-3707407 (Counterclockwise)

Preceding gene: 218531458

Following gene: 218531452

Centisome position: 64.17

GC content: 67.88

Gene sequence:

>411_bases
ATGGCTCGCGTCACCGTCGAAGACTGCATCGAGAAGGTCGAGAACCGCTTCGAGCTGGTCCTGCTCGCCAGCCACCGGGC
GCGCCTGCTCGCCGCCGGCGCCCCGCTAACCGTGGAGCGCGACCGCGACAAGAACCCCGTCGTGGCCCTGCGCGAGATCG
GCGACGAGACCATCACGGCGGAGGATCTCAAGGAGCAGCTCATCCACTCGATGCAGAAATACGTCGAGGTGGACGAGCCC
GAGGCCGAGACCGTGCCGCTCCTGTCGAGCTCGCCCGCCGCTGCCGCGGTGGCGCCCCAGTCGTCCTCGGACGACAAGAA
CGTGCAGTTCGACTTCATGAGCGAGGAGGATCTCCTCCGCGGTCTCGAGAACCTCGCACCGCCGACCGAGACCGACGACG
AGGGCGAGTAG

Upstream 100 bases:

>100_bases
CAACCGCTCCCGCGACTTGTTGGACAGCGATAACCGGTGTAGGAAGCCCGTTCATCACGCATATCGTTCGTATCCGCGCC
TGAGGAAGGAGCCGCCTCGC

Downstream 100 bases:

>100_bases
GCTCTTTTCGCGCTTCGCCTGACGATCCACGCCCGCCCTCGGTCCCCGAGCGGCGGGCGTTCGCGTGTTTCGGTCCCTCT
CCACAGCGACGTCTCGGAAG

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 136; Mature: 135

Protein sequence:

>136_residues
MARVTVEDCIEKVENRFELVLLASHRARLLAAGAPLTVERDRDKNPVVALREIGDETITAEDLKEQLIHSMQKYVEVDEP
EAETVPLLSSSPAAAAVAPQSSSDDKNVQFDFMSEEDLLRGLENLAPPTETDDEGE

Sequences:

>Translated_136_residues
MARVTVEDCIEKVENRFELVLLASHRARLLAAGAPLTVERDRDKNPVVALREIGDETITAEDLKEQLIHSMQKYVEVDEP
EAETVPLLSSSPAAAAVAPQSSSDDKNVQFDFMSEEDLLRGLENLAPPTETDDEGE
>Mature_135_residues
ARVTVEDCIEKVENRFELVLLASHRARLLAAGAPLTVERDRDKNPVVALREIGDETITAEDLKEQLIHSMQKYVEVDEPE
AETVPLLSSSPAAAAVAPQSSSDDKNVQFDFMSEEDLLRGLENLAPPTETDDEGE

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_METC4 (B7KVD3)

Other databases:

- EMBL:   CP001298
- RefSeq:   YP_002422269.1
- GeneID:   7113653
- GenomeReviews:   CP001298_GR
- KEGG:   mch:Mchl_3521
- HOGENOM:   HBG742204
- OMA:   KVDNRFE
- ProtClustDB:   PRK00392
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 14990; Mature: 14859

Theoretical pI: Translated: 4.01; Mature: 4.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVEDCIEKVENRFELVLLASHRARLLAAGAPLTVERDRDKNPVVALREIGDETITA
CCCCCHHHHHHHHHHHHEEEEECCCCCEEEECCCCEEEECCCCCCCEEHHHHCCCCCCCH
EDLKEQLIHSMQKYVEVDEPEAETVPLLSSSPAAAAVAPQSSSDDKNVQFDFMSEEDLLR
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEECHHHHHH
GLENLAPPTETDDEGE
HHHHCCCCCCCCCCCC
>Mature Secondary Structure 
ARVTVEDCIEKVENRFELVLLASHRARLLAAGAPLTVERDRDKNPVVALREIGDETITA
CCCCHHHHHHHHHHHHEEEEECCCCCEEEECCCCEEEECCCCCCCEEHHHHCCCCCCCH
EDLKEQLIHSMQKYVEVDEPEAETVPLLSSSPAAAAVAPQSSSDDKNVQFDFMSEEDLLR
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEECHHHHHH
GLENLAPPTETDDEGE
HHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA