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The map label for this gene is rbgA [H]

Identifier: 218236121

GI number: 218236121

Start: 3859305

End: 3860195

Strand: Reverse

Name: rbgA [H]

Synonym: BCB4264_A3936

Alternate gene names: 218236121

Gene position: 3860195-3859305 (Counterclockwise)

Preceding gene: 218234536

Following gene: 218233890

Centisome position: 71.23

GC content: 36.59

Gene sequence:

>891_bases
ATGGTAATTCAATGGTTTCCAGGGCATATGGCGAAGGCTAGACGCCAAGTAACGGAGAAATTAAAATTAATTGATGTTGT
AATTGAACTTGTAGATGCTCGATTACCATTATCATCTCGAAACCCAATGATTGATGAAATCATTACACATAAGCCAAGGC
TTGTTGTTTTAAATAAAGCGGATATGGCGGATGATCGTTTAACAAAACAATGGATCGCATATTTTAAAGAAAAAGGCCAT
ATGGCAATTTCGATTAACGCGCAAGCTGGACAAGGTATGAAGGAAATTGCAGCAGCTTGTAAAGTGCTTGTTAAAGAAAA
ATTTGATAAAATGGTTGCAAAAGGTATTAGACCGAGAGCGATTCGTGCATTAATTGTAGGTATACCAAATGTTGGTAAAT
CTACATTGATTAATAAATTGGCAAAGAAAAATATTGCTAAAACAGGAGATCGTCCAGGTGTGACAACAGCTCAACAATGG
ATTAAAGTTGGGAAGGAAATGGAATTGTTAGATACACCAGGTATTCTGTGGCCTAAATTTGAAGATCAATTAGTGGGTCT
TCGTTTAGCGACAACGGGTGCAATTAAAGATTCAATTTTAAATTTACAAGATGTAGCTGTTTACGCATTACGTTTTATGG
AGAAACATTATCCAGAACGCTTGAAAGAACGCTATAATTTAAATGAGATTCCAGAAGATATTGTGGAATTATTCGATGCA
ATTGGAAAAAATAGAGGCTGCTTAATGGGCGGCGGAATGATTGATTATGATAAGACATCTGAGCTTGTGCTTCGTGAGCT
TCGTGGTGGCAAACTTGGAAAAATGACGTTTGAAACACCGGAAGAGTTTGGAGAGCAAGTGGAAGATGTGGAAAAAATAG
AAGAAGTATAA

Upstream 100 bases:

>100_bases
GTACGATTTCAATGGATCAAGTAATTGGTAAAGCTAATATGTTATATTGGCCGTTAGAAGACGCACGTATTGTGAAATAA
ATGAAAAAGAAGGTGGCAAC

Downstream 100 bases:

>100_bases
GACGTGCGTTTGTGCGTCTTTTCTTTTTGGATATGTTTAAAAAGGAGCTTGTATAAATGCAAACTATGACGATAAAAGAA
GCGGAAAATGTATTGAAAGA

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MVIQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGH
MAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQW
IKVGKEMELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLKERYNLNEIPEDIVELFDA
IGKNRGCLMGGGMIDYDKTSELVLRELRGGKLGKMTFETPEEFGEQVEDVEKIEEV

Sequences:

>Translated_296_residues
MVIQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGH
MAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQW
IKVGKEMELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLKERYNLNEIPEDIVELFDA
IGKNRGCLMGGGMIDYDKTSELVLRELRGGKLGKMTFETPEEFGEQVEDVEKIEEV
>Mature_296_residues
MVIQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGH
MAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQW
IKVGKEMELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLKERYNLNEIPEDIVELFDA
IGKNRGCLMGGGMIDYDKTSELVLRELRGGKLGKMTFETPEEFGEQVEDVEKIEEV

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=297, Percent_Identity=31.3131313131313, Blast_Score=140, Evalue=1e-33,
Organism=Homo sapiens, GI45643129, Length=321, Percent_Identity=25.5451713395639, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI45643127, Length=321, Percent_Identity=25.5451713395639, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI45593130, Length=321, Percent_Identity=25.5451713395639, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI7019419, Length=252, Percent_Identity=24.6031746031746, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI296317324, Length=281, Percent_Identity=24.9110320284698, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI9506611, Length=281, Percent_Identity=24.9110320284698, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI193211047, Length=235, Percent_Identity=30.6382978723404, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI32563985, Length=247, Percent_Identity=29.5546558704453, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI71990926, Length=247, Percent_Identity=29.5546558704453, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI32563983, Length=247, Percent_Identity=29.5546558704453, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17534827, Length=293, Percent_Identity=27.9863481228669, Blast_Score=92, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI25143545, Length=277, Percent_Identity=25.2707581227437, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI115535155, Length=277, Percent_Identity=25.2707581227437, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71982363, Length=179, Percent_Identity=28.4916201117318, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323744, Length=237, Percent_Identity=32.4894514767932, Blast_Score=86, Evalue=5e-18,
Organism=Saccharomyces cerevisiae, GI6324381, Length=270, Percent_Identity=25.9259259259259, Blast_Score=83, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6320842, Length=276, Percent_Identity=25.3623188405797, Blast_Score=80, Evalue=5e-16,
Organism=Drosophila melanogaster, GI85815858, Length=310, Percent_Identity=30.3225806451613, Blast_Score=128, Evalue=4e-30,
Organism=Drosophila melanogaster, GI19922460, Length=278, Percent_Identity=27.3381294964029, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI28572990, Length=280, Percent_Identity=29.6428571428571, Blast_Score=86, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 33377; Mature: 33377

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: PS00589 PTS_HPR_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKA
CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEEEECC
DMADDRLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRA
CCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH
IRALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKF
HHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHCCCCCCCCCC
EDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLKERYNLNEIPEDIVELFDA
HHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
IGKNRGCLMGGGMIDYDKTSELVLRELRGGKLGKMTFETPEEFGEQVEDVEKIEEV
HCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVIQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKA
CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEEEECC
DMADDRLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRA
CCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH
IRALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKF
HHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHCCCCCCCCCC
EDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLKERYNLNEIPEDIVELFDA
HHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
IGKNRGCLMGGGMIDYDKTSELVLRELRGGKLGKMTFETPEEFGEQVEDVEKIEEV
HCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]