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The map label for this gene is ydcM [C]

Identifier: 218235513

GI number: 218235513

Start: 721865

End: 723022

Strand: Direct

Name: ydcM [C]

Synonym: BCB4264_A0728

Alternate gene names: 218235513

Gene position: 721865-723022 (Clockwise)

Preceding gene: 218231768

Following gene: 218236090

Centisome position: 13.32

GC content: 32.73

Gene sequence:

>1158_bases
ATGAAAAGAGCATATTTAATAGAAATCAAACCGACAACTGAACAAATTAGTAAAATCCGTCAAACTATTGGGGTGTGTCG
ATATGTATATAACCTGTATATCTCTAAAAATAAAGAGGTATATGAGTCGGAGGGGAAATTTCTTAGTGGTTATGACTTTT
CCAAATGGTTAAACAACATTCATACAAAAGAGTGTGACCAGTGGATTAAAGAAGTGTCGAGCAAAGCGGTAAAACAAGCG
ATTATGAATGGAGATAAAGCTTTTAAGCGGTTTTTTAAAGGTTTATCTAAGTTTCCACGATATAAAAAAAAGAAGAAGCA
AGATGTGAAGTGCTACTTTCCGAAAAACAACAAAACAGATTGGACAGTAGAAAGACATAGAGTAAAAGTCCCTACAATTG
GTTGGATAAGGTTAAAAGAGTATGGATATATTTCAAAAAATACAACTGTAAAAAGTGGTACAGTATATCAAAGAGCAGGA
AGATACTATGTGTCTATACTCTGTGAAGTGAAAGAGGTAAAACCAAATGCAACTCTCAATACAGTAGGTCTAGGAATTGA
TTTGGGAATTAAAGATTTCGCTGTACGTAGCGATGGAAAAACTCACAAAAATATAAATAAAACAGTACAAGTAAAAAAGA
TAGAAAAACGGTTAAAACGTGAACAACGCTCTTTATCACGCAAATTTGAAAATATAAGAAAGAGAGGTGAACAACCTGTT
ACTAATAAAAGAGCGAATATAAACAAAAATATTCTTAGGGTGCAACAACTACATGCTAGGCTAGCAAATATTCGATTAGC
GTATGTAAAGTCTATTGTAAATGATGTGGTGAAAACCAAGCCAACGTTTATTGTAGTAGAAGATTTGAATGTGAAAGGTA
TGATGAAGAACAAACATCTATCTAAAGCTGTAGCGCAACAATGTTTTTATGCTTTTAAAACATGGTTATTAACGAAATGT
AGGGAATATGGAATTGAACTACGGCAAGTGGACAGATTCTATCCATCTTCTAAAATGTGTTCATGTTGCGGTCAAAAAAA
GTCGGATTTAAAGCTGTCTGACCGAGTATATACATGTGAATATGGTAATGTAATAGATAGAGATTTAAATGCGTCAATCA
ACCTTTTACAAGCAAAAAAATATACAATACTAACGTAA

Upstream 100 bases:

>100_bases
AAGAACTTGTTCAGGATTTAATATCTATCATTCATGTATTTAGCTGTAGAATATATGGGTTGAGAAAATACAAAAAGAAA
ATGTCGGAGGATGAAGACTT

Downstream 100 bases:

>100_bases
ATAGATTGTATATATGTACGGTGGGCTACATCGGAATTTACGCCTGTGAAGTGTCACAGCAAACTGTAGTAGCAAGTGAT
TAGCGAGGCAGGGCACGTAG

Product: transposase, IS605 family

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 385; Mature: 385

Protein sequence:

>385_residues
MKRAYLIEIKPTTEQISKIRQTIGVCRYVYNLYISKNKEVYESEGKFLSGYDFSKWLNNIHTKECDQWIKEVSSKAVKQA
IMNGDKAFKRFFKGLSKFPRYKKKKKQDVKCYFPKNNKTDWTVERHRVKVPTIGWIRLKEYGYISKNTTVKSGTVYQRAG
RYYVSILCEVKEVKPNATLNTVGLGIDLGIKDFAVRSDGKTHKNINKTVQVKKIEKRLKREQRSLSRKFENIRKRGEQPV
TNKRANINKNILRVQQLHARLANIRLAYVKSIVNDVVKTKPTFIVVEDLNVKGMMKNKHLSKAVAQQCFYAFKTWLLTKC
REYGIELRQVDRFYPSSKMCSCCGQKKSDLKLSDRVYTCEYGNVIDRDLNASINLLQAKKYTILT

Sequences:

>Translated_385_residues
MKRAYLIEIKPTTEQISKIRQTIGVCRYVYNLYISKNKEVYESEGKFLSGYDFSKWLNNIHTKECDQWIKEVSSKAVKQA
IMNGDKAFKRFFKGLSKFPRYKKKKKQDVKCYFPKNNKTDWTVERHRVKVPTIGWIRLKEYGYISKNTTVKSGTVYQRAG
RYYVSILCEVKEVKPNATLNTVGLGIDLGIKDFAVRSDGKTHKNINKTVQVKKIEKRLKREQRSLSRKFENIRKRGEQPV
TNKRANINKNILRVQQLHARLANIRLAYVKSIVNDVVKTKPTFIVVEDLNVKGMMKNKHLSKAVAQQCFYAFKTWLLTKC
REYGIELRQVDRFYPSSKMCSCCGQKKSDLKLSDRVYTCEYGNVIDRDLNASINLLQAKKYTILT
>Mature_385_residues
MKRAYLIEIKPTTEQISKIRQTIGVCRYVYNLYISKNKEVYESEGKFLSGYDFSKWLNNIHTKECDQWIKEVSSKAVKQA
IMNGDKAFKRFFKGLSKFPRYKKKKKQDVKCYFPKNNKTDWTVERHRVKVPTIGWIRLKEYGYISKNTTVKSGTVYQRAG
RYYVSILCEVKEVKPNATLNTVGLGIDLGIKDFAVRSDGKTHKNINKTVQVKKIEKRLKREQRSLSRKFENIRKRGEQPV
TNKRANINKNILRVQQLHARLANIRLAYVKSIVNDVVKTKPTFIVVEDLNVKGMMKNKHLSKAVAQQCFYAFKTWLLTKC
REYGIELRQVDRFYPSSKMCSCCGQKKSDLKLSDRVYTCEYGNVIDRDLNASINLLQAKKYTILT

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=381, Percent_Identity=28.8713910761155, Blast_Score=151, Evalue=9e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 44971; Mature: 44971

Theoretical pI: Translated: 10.60; Mature: 10.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRAYLIEIKPTTEQISKIRQTIGVCRYVYNLYISKNKEVYESEGKFLSGYDFSKWLNNI
CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEECCCCHHHHHHHC
HTKECDQWIKEVSSKAVKQAIMNGDKAFKRFFKGLSKFPRYKKKKKQDVKCYFPKNNKTD
CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHCCCCCEEECCCCCCCC
WTVERHRVKVPTIGWIRLKEYGYISKNTTVKSGTVYQRAGRYYVSILCEVKEVKPNATLN
CEEEEEEEECCCCEEEEEECCCCCCCCCEECCCCHHHHHCCEEEHHHHHHHHCCCCCCEE
TVGLGIDLGIKDFAVRSDGKTHKNINKTVQVKKIEKRLKREQRSLSRKFENIRKRGEQPV
EEEEEEECCCHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TNKRANINKNILRVQQLHARLANIRLAYVKSIVNDVVKTKPTFIVVEDLNVKGMMKNKHL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
SKAVAQQCFYAFKTWLLTKCREYGIELRQVDRFYPSSKMCSCCGQKKSDLKLSDRVYTCE
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHCCCCCCCEECCCEEEEE
YGNVIDRDLNASINLLQAKKYTILT
CCCCCCCCCCCCEEEEEECCEEECC
>Mature Secondary Structure
MKRAYLIEIKPTTEQISKIRQTIGVCRYVYNLYISKNKEVYESEGKFLSGYDFSKWLNNI
CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEECCCCHHHHHHHC
HTKECDQWIKEVSSKAVKQAIMNGDKAFKRFFKGLSKFPRYKKKKKQDVKCYFPKNNKTD
CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHCCCCCEEECCCCCCCC
WTVERHRVKVPTIGWIRLKEYGYISKNTTVKSGTVYQRAGRYYVSILCEVKEVKPNATLN
CEEEEEEEECCCCEEEEEECCCCCCCCCEECCCCHHHHHCCEEEHHHHHHHHCCCCCCEE
TVGLGIDLGIKDFAVRSDGKTHKNINKTVQVKKIEKRLKREQRSLSRKFENIRKRGEQPV
EEEEEEECCCHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TNKRANINKNILRVQQLHARLANIRLAYVKSIVNDVVKTKPTFIVVEDLNVKGMMKNKHL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
SKAVAQQCFYAFKTWLLTKCREYGIELRQVDRFYPSSKMCSCCGQKKSDLKLSDRVYTCE
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHCCCCCCCEECCCEEEEE
YGNVIDRDLNASINLLQAKKYTILT
CCCCCCCCCCCCEEEEEECCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]