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The map label for this gene is rpoE [C]

Identifier: 218235233

GI number: 218235233

Start: 1705516

End: 1705854

Strand: Reverse

Name: rpoE [C]

Synonym: BCB4264_A1801

Alternate gene names: 218235233

Gene position: 1705854-1705516 (Counterclockwise)

Preceding gene: 218231216

Following gene: 218235003

Centisome position: 31.48

GC content: 35.4

Gene sequence:

>339_bases
ATGGCACGTATCGCCACCAATCACGCTATTGATTATAAGAGAAAGAAAGCTAGAGAAAACGAAGAACTCTCCTTATGTAA
AGAAACAGAGGAAAATATAAAATCCTCTCATAACATTGAAGCTTTACTATTGACGAAAGAGCAAAAATTACTCATTGCTC
AAAAACTGAGAGAACTTCCCGAAAATTACCGTGACGTCGTTCTCGCACATTACTTAGAAGAAAAAAGTTATCAAGAAATT
GCTTTACAGGAAAACATCGAAGTAAAAACAGTCGAAATGAAACTGTATCGGGCACGAAAATGGATTAAAAAACATTGGAA
GGAGGAAGAGTTTCTATGA

Upstream 100 bases:

>100_bases
TTTAAGACATGAAGAAGATGCGAAAGATGTTACACAAGAAGTATTCGTAAAAATTCACACCTCTCTCCCAAATTATCAAT
TTCGCGGATTAAAAACGTGG

Downstream 100 bases:

>100_bases
TGCATTATTCAAAAGAAGATTGGCGCAATTATACATTAGATTTTATAGAAAGCAATGAACGTGAATCTATGGAAGAACAT
CTTTATGAATGTGATGATTG

Product: RNA polymerase sigma factor SigW

Products: NA

Alternate protein names: RNA Polymerase Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma Factor SigW

Number of amino acids: Translated: 112; Mature: 111

Protein sequence:

>112_residues
MARIATNHAIDYKRKKARENEELSLCKETEENIKSSHNIEALLLTKEQKLLIAQKLRELPENYRDVVLAHYLEEKSYQEI
ALQENIEVKTVEMKLYRARKWIKKHWKEEEFL

Sequences:

>Translated_112_residues
MARIATNHAIDYKRKKARENEELSLCKETEENIKSSHNIEALLLTKEQKLLIAQKLRELPENYRDVVLAHYLEEKSYQEI
ALQENIEVKTVEMKLYRARKWIKKHWKEEEFL
>Mature_111_residues
ARIATNHAIDYKRKKARENEELSLCKETEENIKSSHNIEALLLTKEQKLLIAQKLRELPENYRDVVLAHYLEEKSYQEIA
LQENIEVKTVEMKLYRARKWIKKHWKEEEFL

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13540; Mature: 13409

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARIATNHAIDYKRKKARENEELSLCKETEENIKSSHNIEALLLTKEQKLLIAQKLRELP
CCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH
ENYRDVVLAHYLEEKSYQEIALQENIEVKTVEMKLYRARKWIKKHWKEEEFL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
ARIATNHAIDYKRKKARENEELSLCKETEENIKSSHNIEALLLTKEQKLLIAQKLRELP
CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH
ENYRDVVLAHYLEEKSYQEIALQENIEVKTVEMKLYRARKWIKKHWKEEEFL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA