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The map label for this gene is scdA [H]

Identifier: 218234750

GI number: 218234750

Start: 2057080

End: 2057787

Strand: Reverse

Name: scdA [H]

Synonym: BCB4264_A2153

Alternate gene names: 218234750

Gene position: 2057787-2057080 (Counterclockwise)

Preceding gene: 218234366

Following gene: 218231277

Centisome position: 37.97

GC content: 31.36

Gene sequence:

>708_bases
ATGGAACATACATTTACTGAAACTTCAATTGTTGGTGAGATTGTTACACAATTTCCGAAAGCTAGTGATCTTTTTAAATC
ATATAGAATAGATTTTTGTTGTGGCGGTAATAAGCCACTTATTGATGCAATTCATGAAAGAAATTTATCAGCTACTGAAG
TGCTTACAGAGTTAAATACGCTTTATCATAATACGAAACGATTAAATGAATCGAAAATTGATTGGAAAAATGCTTCTTAT
CGTGAATTGATTGATTATGTTATAAATAAGCATCACCGCTATTTAAATGAAGAATTACCACAGTTAAGTCCATATGTGAC
AAAAGTAGTACGTGTTCATGGGGCAAGTCAGCCTCATTTAGCTCAAATTTATAAGCTATTTCATGAACTTAAAATGGAAT
TAGAACAGCATTTAATTAAAGAAGAAATGGAAGATTTTCCATTAATTTTAGAATTTGAACAAAATCCAACTAATGAAAAC
TATGCTAAGTTACGTAAAGTAGTAAATGAACTAGAAAATGAGCACAATCATGCTGGAAATATTATAAAAGAACTTCGTAA
AGTGACAAATGACTTTACTCCTCCAGAAGGTGCTTGCGGTACTTATCGACTTGTTTACCAACGTCTTGAAGCGCTAGAGT
CTGATTTATTTGAGCACATTCATTTAGAAAATAATATTTTATTTCCACGTGCCATTACGAGAGCATAA

Upstream 100 bases:

>100_bases
AAAATTGACACATTATAAGTGATTTCAATCACCACATTGTTTTTCATTTATCGCTATTTTTAATTCAGATATTACATTAA
AACTTTATGGAGGCATTCAT

Downstream 100 bases:

>100_bases
ATAAAGAGCAGGACATGAGTATACATACTTATGTCCTGCTCTTTCATTTGGTAAAGACTATACACATCCCTCTCGAATAA
ATCCGAATTTTAACAATTTG

Product: ScdA protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MEHTFTETSIVGEIVTQFPKASDLFKSYRIDFCCGGNKPLIDAIHERNLSATEVLTELNTLYHNTKRLNESKIDWKNASY
RELIDYVINKHHRYLNEELPQLSPYVTKVVRVHGASQPHLAQIYKLFHELKMELEQHLIKEEMEDFPLILEFEQNPTNEN
YAKLRKVVNELENEHNHAGNIIKELRKVTNDFTPPEGACGTYRLVYQRLEALESDLFEHIHLENNILFPRAITRA

Sequences:

>Translated_235_residues
MEHTFTETSIVGEIVTQFPKASDLFKSYRIDFCCGGNKPLIDAIHERNLSATEVLTELNTLYHNTKRLNESKIDWKNASY
RELIDYVINKHHRYLNEELPQLSPYVTKVVRVHGASQPHLAQIYKLFHELKMELEQHLIKEEMEDFPLILEFEQNPTNEN
YAKLRKVVNELENEHNHAGNIIKELRKVTNDFTPPEGACGTYRLVYQRLEALESDLFEHIHLENNILFPRAITRA
>Mature_235_residues
MEHTFTETSIVGEIVTQFPKASDLFKSYRIDFCCGGNKPLIDAIHERNLSATEVLTELNTLYHNTKRLNESKIDWKNASY
RELIDYVINKHHRYLNEELPQLSPYVTKVVRVHGASQPHLAQIYKLFHELKMELEQHLIKEEMEDFPLILEFEQNPTNEN
YAKLRKVVNELENEHNHAGNIIKELRKVTNDFTPPEGACGTYRLVYQRLEALESDLFEHIHLENNILFPRAITRA

Specific function: Involved in peptidoglycan cross-linking. Required for normal cell growth and development [H]

COG id: COG2846

COG function: function code D; Regulator of cell morphogenesis and NO signaling

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scdA family [H]

Homologues:

Organism=Escherichia coli, GI1790654, Length=226, Percent_Identity=35.8407079646018, Blast_Score=141, Evalue=3e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007500
- InterPro:   IPR019903
- InterPro:   IPR012312 [H]

Pfam domain/function: PF01814 Hemerythrin; PF04405 ScdA_N [H]

EC number: NA

Molecular weight: Translated: 27556; Mature: 27556

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHTFTETSIVGEIVTQFPKASDLFKSYRIDFCCGGNKPLIDAIHERNLSATEVLTELNT
CCCCHHHHHHHHHHHHHCCCHHHHHHHHCCEEEECCCCHHHHHHHHCCCHHHHHHHHHHH
LYHNTKRLNESKIDWKNASYRELIDYVINKHHRYLNEELPQLSPYVTKVVRVHGASQPHL
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
AQIYKLFHELKMELEQHLIKEEMEDFPLILEFEQNPTNENYAKLRKVVNELENEHNHAGN
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCHHHH
IIKELRKVTNDFTPPEGACGTYRLVYQRLEALESDLFEHIHLENNILFPRAITRA
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHCC
>Mature Secondary Structure
MEHTFTETSIVGEIVTQFPKASDLFKSYRIDFCCGGNKPLIDAIHERNLSATEVLTELNT
CCCCHHHHHHHHHHHHHCCCHHHHHHHHCCEEEECCCCHHHHHHHHCCCHHHHHHHHHHH
LYHNTKRLNESKIDWKNASYRELIDYVINKHHRYLNEELPQLSPYVTKVVRVHGASQPHL
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
AQIYKLFHELKMELEQHLIKEEMEDFPLILEFEQNPTNENYAKLRKVVNELENEHNHAGN
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCHHHH
IIKELRKVTNDFTPPEGACGTYRLVYQRLEALESDLFEHIHLENNILFPRAITRA
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA