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The map label for this gene is lsrC [H]

Identifier: 218234666

GI number: 218234666

Start: 2851266

End: 2852219

Strand: Reverse

Name: lsrC [H]

Synonym: BCB4264_A2978

Alternate gene names: 218234666

Gene position: 2852219-2851266 (Counterclockwise)

Preceding gene: 218231001

Following gene: 218232733

Centisome position: 52.63

GC content: 35.12

Gene sequence:

>954_bases
ATGAAACATATGTTAAAAATGCATGAAACGTCTATCATACTGTTACTACTAATTTATATAGCTATTGTAGGAATGATAAA
CCCTAGTTTTATTCAATTTAACTCGTTATCTTTACTGATGAAATCAAGCGTTATTTTAGTCGTGCTAGCAATCGGTCAAT
CGTTCGTCTTATTTACGAAAAATATAGATGTATCAGTTGGTTCAAGCATGGGGTTAAGTGCAGCAGTTTGCGGAATGATG
TTAACGAATGGGTATAGTGCATTCTTGTCGATATTTGTAGCTATTATACTTGGGGCTATTATTGGTTTCGTAAATGGTAT
TGGAGTTGCGAAGTTTCGGGTACCAGCCATTATTATGACATTAGGCATGTTAGGAATTATTAGAGGTACAATGTTAATTT
TCACAGGCGGGAAGTGGATTGAAGATATTCCAAACGATTTTAAGCAGCTGCCATCTATCATCATTCTTGGTTTACCTATA
ACTGTATGGTTCGTTCTTATTATTTTACTACTACTATACTTCTTTTTAAGAAAAGTGCCATTGGGAAGATACTTTTATGC
GGTAGGTGATAATGAAGATGGCGCGAGGCTTATTGGTATACCTGTTAATAAAGTGAAGATATATGCGTTTATGATTTCAG
GCATAAGCGCTGCGATCGCTGGTTGCATATTTGTTATGAATATCGGTTTCGTGCCAAATCAAACAGGTACAGGATTAGAA
TTACAAGTAATCGCAGCCGCTGTACTAGGAGGAATTCCCTTAAAAGGAGGAACAGGATCTTTATTTGGAGCTGCATTAGG
AGCGTTATTTTTAGAAACAATAAGTAGCTCACTCGTCTTTTTAAAAATACCAGCATTTTGGAATAATGCTATTTCAGGTT
TTTTATTATTACTTATCATCATATTAGATAGTGTTATGAAAAAGTGGAAGGCAGAAAGGAGGATGAATCTATGA

Upstream 100 bases:

>100_bases
GTGTATATGTAATGAGAAATGGGCGATTTGTTTCTCATATGGAAAAAGAACAACTGAGTGTGAATGAAGTTACACGCCTT
GCATACGGAGGTGTAGCGGA

Downstream 100 bases:

>100_bases
AGTATGTATATAGATGGGAAGGGGTTCTAATTGTATTACTTCTTGTAGAATTCATCCTTTTTAGTTTAATAAATAGTGAT
TTCTTAAATATTAGTAATCT

Product: putative ribose ABC transporter, permease protein

Products: NA

Alternate protein names: AI-2 import system permease protein lsrC [H]

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MKHMLKMHETSIILLLLIYIAIVGMINPSFIQFNSLSLLMKSSVILVVLAIGQSFVLFTKNIDVSVGSSMGLSAAVCGMM
LTNGYSAFLSIFVAIILGAIIGFVNGIGVAKFRVPAIIMTLGMLGIIRGTMLIFTGGKWIEDIPNDFKQLPSIIILGLPI
TVWFVLIILLLLYFFLRKVPLGRYFYAVGDNEDGARLIGIPVNKVKIYAFMISGISAAIAGCIFVMNIGFVPNQTGTGLE
LQVIAAAVLGGIPLKGGTGSLFGAALGALFLETISSSLVFLKIPAFWNNAISGFLLLLIIILDSVMKKWKAERRMNL

Sequences:

>Translated_317_residues
MKHMLKMHETSIILLLLIYIAIVGMINPSFIQFNSLSLLMKSSVILVVLAIGQSFVLFTKNIDVSVGSSMGLSAAVCGMM
LTNGYSAFLSIFVAIILGAIIGFVNGIGVAKFRVPAIIMTLGMLGIIRGTMLIFTGGKWIEDIPNDFKQLPSIIILGLPI
TVWFVLIILLLLYFFLRKVPLGRYFYAVGDNEDGARLIGIPVNKVKIYAFMISGISAAIAGCIFVMNIGFVPNQTGTGLE
LQVIAAAVLGGIPLKGGTGSLFGAALGALFLETISSSLVFLKIPAFWNNAISGFLLLLIIILDSVMKKWKAERRMNL
>Mature_317_residues
MKHMLKMHETSIILLLLIYIAIVGMINPSFIQFNSLSLLMKSSVILVVLAIGQSFVLFTKNIDVSVGSSMGLSAAVCGMM
LTNGYSAFLSIFVAIILGAIIGFVNGIGVAKFRVPAIIMTLGMLGIIRGTMLIFTGGKWIEDIPNDFKQLPSIIILGLPI
TVWFVLIILLLLYFFLRKVPLGRYFYAVGDNEDGARLIGIPVNKVKIYAFMISGISAAIAGCIFVMNIGFVPNQTGTGLE
LQVIAAAVLGGIPLKGGTGSLFGAALGALFLETISSSLVFLKIPAFWNNAISGFLLLLIIILDSVMKKWKAERRMNL

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787793, Length=284, Percent_Identity=45.7746478873239, Blast_Score=238, Evalue=5e-64,
Organism=Escherichia coli, GI1790191, Length=305, Percent_Identity=35.4098360655738, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI145693152, Length=283, Percent_Identity=32.5088339222615, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1790524, Length=297, Percent_Identity=29.6296296296296, Blast_Score=124, Evalue=9e-30,
Organism=Escherichia coli, GI1788896, Length=317, Percent_Identity=29.3375394321767, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1789992, Length=354, Percent_Identity=30.225988700565, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1787794, Length=320, Percent_Identity=29.0625, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI145693214, Length=258, Percent_Identity=30.6201550387597, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1788471, Length=325, Percent_Identity=28, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87082395, Length=297, Percent_Identity=24.5791245791246, Blast_Score=79, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34185; Mature: 34185

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHMLKMHETSIILLLLIYIAIVGMINPSFIQFNSLSLLMKSSVILVVLAIGQSFVLFTK
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHCCEEEEEEE
NIDVSVGSSMGLSAAVCGMMLTNGYSAFLSIFVAIILGAIIGFVNGIGVAKFRVPAIIMT
CCCEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
LGMLGIIRGTMLIFTGGKWIEDIPNDFKQLPSIIILGLPITVWFVLIILLLLYFFLRKVP
HHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHCC
LGRYFYAVGDNEDGARLIGIPVNKVKIYAFMISGISAAIAGCIFVMNIGFVPNQTGTGLE
CCCEEEEECCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
LQVIAAAVLGGIPLKGGTGSLFGAALGALFLETISSSLVFLKIPAFWNNAISGFLLLLII
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHH
ILDSVMKKWKAERRMNL
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKHMLKMHETSIILLLLIYIAIVGMINPSFIQFNSLSLLMKSSVILVVLAIGQSFVLFTK
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHCCEEEEEEE
NIDVSVGSSMGLSAAVCGMMLTNGYSAFLSIFVAIILGAIIGFVNGIGVAKFRVPAIIMT
CCCEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
LGMLGIIRGTMLIFTGGKWIEDIPNDFKQLPSIIILGLPITVWFVLIILLLLYFFLRKVP
HHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHCC
LGRYFYAVGDNEDGARLIGIPVNKVKIYAFMISGISAAIAGCIFVMNIGFVPNQTGTGLE
CCCEEEEECCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
LQVIAAAVLGGIPLKGGTGSLFGAALGALFLETISSSLVFLKIPAFWNNAISGFLLLLII
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHH
ILDSVMKKWKAERRMNL
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 14528314 [H]