Click here to switch to the map view.

The map label for this gene is ydbM [H]

Identifier: 218233266

GI number: 218233266

Start: 2965246

End: 2966394

Strand: Reverse

Name: ydbM [H]

Synonym: BCB4264_A3094

Alternate gene names: 218233266

Gene position: 2966394-2965246 (Counterclockwise)

Preceding gene: 218232485

Following gene: 218233149

Centisome position: 54.74

GC content: 39.86

Gene sequence:

>1149_bases
ATGGCACTCTCATTTGTTGAAACAGAAGAACAGTCTTTAATTATTGAGAAAATAAATAAATTGATTCCGAAGTTCATGGA
AAGGGAGCATCAGTTAAGTGAATTAGGATCATTTCCGTATGAAAATATAAATGATTTGAAAGATATCGGATATACGAAAT
TAACGTTACCGAAGGAATTTGGTGGTAGTCCCATTTCTTTATATGACTTCGTTTTATTTCAAGAGAAAATCGCGGAAGGC
TGTGGAGCTACTGCATTATCGATTGGCTGGCATCTTGGCATTGTGAAGGAGCTAGCGGAAAATCGCTCTTGGAATGATGA
GATGTTCAAATGGTTTTGCGAAGAAGTACGTAATGGTGCGCTCTTTAACAGGGCAGCAACAGAACCGAAAACAGGGAGTC
CGACGCGTGGCGGCAAACCAGAAACAATAGCGGTTCAACAAGGCGAGAAGTGGGTTATAAATGGAAGAAAAACTTTTACA
ACGATGGCGCCAGTACTTGATTATTTTATTATTTCAGCAAGTATGGAAGGCCGTGAAGAAGTTGGTGAGTTTGTTATTCC
AAGAAATACACTCGGTGTATCTATTGAAGAAACGTGGGATAGCGTTGCAATGCGAGGGACTGCTAGCCACGACCTTGTCT
TACAAAATGTAGAGATAGAAAGTCGCTTTTTTACAGATATAAAGGGCGGGAAAGTGAAACAAAAGGGTATTGGCTGGTTG
CTACATATACCAGCATGTTATTTAGGAATTGCACAATCAGCAAGAAATTATGCAGTTCAGTTTGCGGGATCATACAAACC
AAATAGTTTAAATCATTCTATTAGTTTATTACCGAATGTTAGAAGATTAGTTGGAGAATTAGAACTCGAGCTTATGCAAG
CTCGCGTCTTTTTATATCAAATTGCGAAAAAGTACGATGAGGCAGAAGATAAACTGTCACTGCAAGCAGAATTAGCGGCA
GTGAAATACGCCGTAACAAATGCGGCGATATCTATAGTGGATAAATCGATGCGCATCGTAGGAGCAAAAAGTTTATCAGA
AAAAAATCCGCTCCATCGTTACTATTTAAACGTCAGAGCAGGATTACACAATCCACCGATGGATGATGCAACATTATCTA
TGCTTGCGGATGCGGCGTTTCGGTCGTGA

Upstream 100 bases:

>100_bases
TGTATTTTTATCGGAATAGTGAAACAATAGAGAGGTAGCTTCATATAATCATAATGATAAAATGAACGGTTTATGAATCG
AGCATAAAGGAGATTATAGT

Downstream 100 bases:

>100_bases
TTTTTGAAGTTTACATTTTATTGTTTATGGATATTATAGTTGTTTTGAAAGCACGGGTTTGATTAGTAATCAAACCCGTG
CTTTTTATGTGTATGAAGTA

Product: putative acyl-CoA dehydrogenase, short-chain specific

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 381

Protein sequence:

>382_residues
MALSFVETEEQSLIIEKINKLIPKFMEREHQLSELGSFPYENINDLKDIGYTKLTLPKEFGGSPISLYDFVLFQEKIAEG
CGATALSIGWHLGIVKELAENRSWNDEMFKWFCEEVRNGALFNRAATEPKTGSPTRGGKPETIAVQQGEKWVINGRKTFT
TMAPVLDYFIISASMEGREEVGEFVIPRNTLGVSIEETWDSVAMRGTASHDLVLQNVEIESRFFTDIKGGKVKQKGIGWL
LHIPACYLGIAQSARNYAVQFAGSYKPNSLNHSISLLPNVRRLVGELELELMQARVFLYQIAKKYDEAEDKLSLQAELAA
VKYAVTNAAISIVDKSMRIVGAKSLSEKNPLHRYYLNVRAGLHNPPMDDATLSMLADAAFRS

Sequences:

>Translated_382_residues
MALSFVETEEQSLIIEKINKLIPKFMEREHQLSELGSFPYENINDLKDIGYTKLTLPKEFGGSPISLYDFVLFQEKIAEG
CGATALSIGWHLGIVKELAENRSWNDEMFKWFCEEVRNGALFNRAATEPKTGSPTRGGKPETIAVQQGEKWVINGRKTFT
TMAPVLDYFIISASMEGREEVGEFVIPRNTLGVSIEETWDSVAMRGTASHDLVLQNVEIESRFFTDIKGGKVKQKGIGWL
LHIPACYLGIAQSARNYAVQFAGSYKPNSLNHSISLLPNVRRLVGELELELMQARVFLYQIAKKYDEAEDKLSLQAELAA
VKYAVTNAAISIVDKSMRIVGAKSLSEKNPLHRYYLNVRAGLHNPPMDDATLSMLADAAFRS
>Mature_381_residues
ALSFVETEEQSLIIEKINKLIPKFMEREHQLSELGSFPYENINDLKDIGYTKLTLPKEFGGSPISLYDFVLFQEKIAEGC
GATALSIGWHLGIVKELAENRSWNDEMFKWFCEEVRNGALFNRAATEPKTGSPTRGGKPETIAVQQGEKWVINGRKTFTT
MAPVLDYFIISASMEGREEVGEFVIPRNTLGVSIEETWDSVAMRGTASHDLVLQNVEIESRFFTDIKGGKVKQKGIGWLL
HIPACYLGIAQSARNYAVQFAGSYKPNSLNHSISLLPNVRRLVGELELELMQARVFLYQIAKKYDEAEDKLSLQAELAAV
KYAVTNAAISIVDKSMRIVGAKSLSEKNPLHRYYLNVRAGLHNPPMDDATLSMLADAAFRS

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4557233, Length=332, Percent_Identity=22.8915662650602, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI226958412, Length=369, Percent_Identity=21.680216802168, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI226958414, Length=324, Percent_Identity=21.2962962962963, Blast_Score=74, Evalue=2e-13,
Organism=Escherichia coli, GI87081958, Length=380, Percent_Identity=23.1578947368421, Blast_Score=66, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17538396, Length=318, Percent_Identity=24.5283018867925, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17508101, Length=373, Percent_Identity=22.5201072386059, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI21356377, Length=343, Percent_Identity=23.0320699708455, Blast_Score=88, Evalue=9e-18,
Organism=Drosophila melanogaster, GI24646207, Length=349, Percent_Identity=24.6418338108883, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI21355753, Length=319, Percent_Identity=22.884012539185, Blast_Score=79, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24666513, Length=388, Percent_Identity=22.4226804123711, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 42720; Mature: 42589

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALSFVETEEQSLIIEKINKLIPKFMEREHQLSELGSFPYENINDLKDIGYTKLTLPKEF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCEEEECCHHH
GGSPISLYDFVLFQEKIAEGCGATALSIGWHLGIVKELAENRSWNDEMFKWFCEEVRNGA
CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
LFNRAATEPKTGSPTRGGKPETIAVQQGEKWVINGRKTFTTMAPVLDYFIISASMEGREE
EECCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCHHHHHHHHHHHHHHHHCCCCCHHH
VGEFVIPRNTLGVSIEETWDSVAMRGTASHDLVLQNVEIESRFFTDIKGGKVKQKGIGWL
HCCEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHCCCCCEEECCCCCEE
LHIPACYLGIAQSARNYAVQFAGSYKPNSLNHSISLLPNVRRLVGELELELMQARVFLYQ
EEHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAKKYDEAEDKLSLQAELAAVKYAVTNAAISIVDKSMRIVGAKSLSEKNPLHRYYLNVRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEC
GLHNPPMDDATLSMLADAAFRS
CCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
ALSFVETEEQSLIIEKINKLIPKFMEREHQLSELGSFPYENINDLKDIGYTKLTLPKEF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCEEEECCHHH
GGSPISLYDFVLFQEKIAEGCGATALSIGWHLGIVKELAENRSWNDEMFKWFCEEVRNGA
CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
LFNRAATEPKTGSPTRGGKPETIAVQQGEKWVINGRKTFTTMAPVLDYFIISASMEGREE
EECCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCHHHHHHHHHHHHHHHHCCCCCHHH
VGEFVIPRNTLGVSIEETWDSVAMRGTASHDLVLQNVEIESRFFTDIKGGKVKQKGIGWL
HCCEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHCCCCCEEECCCCCEE
LHIPACYLGIAQSARNYAVQFAGSYKPNSLNHSISLLPNVRRLVGELELELMQARVFLYQ
EEHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAKKYDEAEDKLSLQAELAAVKYAVTNAAISIVDKSMRIVGAKSLSEKNPLHRYYLNVRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEC
GLHNPPMDDATLSMLADAAFRS
CCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]