Click here to switch to the map view.

The map label for this gene is ydfF [H]

Identifier: 218233149

GI number: 218233149

Start: 2963783

End: 2964490

Strand: Reverse

Name: ydfF [H]

Synonym: BCB4264_A3092

Alternate gene names: 218233149

Gene position: 2964490-2963783 (Counterclockwise)

Preceding gene: 218233266

Following gene: 218233339

Centisome position: 54.71

GC content: 36.16

Gene sequence:

>708_bases
ATGAATGTATATCCGAATATCTCATATATAGCTAAACTAATTGCTGAACCTACAAGAGCAATCATCTTAGATTGTCTAAT
GAATAATCAGGCACTACCTGCTAGTGAATTGGCTTATATGGCAAAAGTGTCACATCCAACAATTAGTTCGCATCTTTCTA
AATTAGTAGAAGGGAATTTACTTACAGTTGAACAACATGGTAGACATCGTTACTATCGACTTGCTAATCAAGAAGTTGCC
GAAGTGCTTGAAAAGTTAGGGACAATTGCACCAACAGTTCAAGTTCGCTCTTTAAAACAATCAACCCAACTAAAACAAAT
TCGTTATGCTCGAACTTGTTATGATCATCTTGCAGGCAAACTCGGTGTAGAGATAACTGAAAAATTACTAGATAGGCAAT
TTATAATTTTAGAGGGTGGAGAATACATTGTAACGGAACAAGGTAAGAAATGGTTTCTGAATTTTGGAATAAATGTTGAT
GAGGCAGATACAAAAAGGAGGGTATTTGCAAAACCTTGCCTTGATTGGAGTGAACGGCGTTACCATATTTCTGGTTGGTT
AGGGTCTGCAATTGCAAAACTGTTTTTTGAACAGGGATGGATTACGAAAACGGATAAGAACCGAGCTGTCCATCTTACAA
AGAAAGGTGTAAAGTTATTGGAAGATCAATTAGGCATTGATATGAAAACTGAGGAAAGAAAAGTTTGA

Upstream 100 bases:

>100_bases
AATTTAATATACTAAGATCAATTGCATTCATAATACATTCTCCTTTACTATTAAACTTAAAATAATTGTATCAATTTAAT
AGTTAGGGTATCATCGAAAT

Downstream 100 bases:

>100_bases
AATTAGAAAAGTCCGTCAAAATGACGGTTTTTTTCATTATGGTAGGAGTGTACATGAATAATAGGATGTCCCAAATAATT
ATTGCCAATAAAAAAATCTT

Product: transcriptional regulator, ArsR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MNVYPNISYIAKLIAEPTRAIILDCLMNNQALPASELAYMAKVSHPTISSHLSKLVEGNLLTVEQHGRHRYYRLANQEVA
EVLEKLGTIAPTVQVRSLKQSTQLKQIRYARTCYDHLAGKLGVEITEKLLDRQFIILEGGEYIVTEQGKKWFLNFGINVD
EADTKRRVFAKPCLDWSERRYHISGWLGSAIAKLFFEQGWITKTDKNRAVHLTKKGVKLLEDQLGIDMKTEERKV

Sequences:

>Translated_235_residues
MNVYPNISYIAKLIAEPTRAIILDCLMNNQALPASELAYMAKVSHPTISSHLSKLVEGNLLTVEQHGRHRYYRLANQEVA
EVLEKLGTIAPTVQVRSLKQSTQLKQIRYARTCYDHLAGKLGVEITEKLLDRQFIILEGGEYIVTEQGKKWFLNFGINVD
EADTKRRVFAKPCLDWSERRYHISGWLGSAIAKLFFEQGWITKTDKNRAVHLTKKGVKLLEDQLGIDMKTEERKV
>Mature_235_residues
MNVYPNISYIAKLIAEPTRAIILDCLMNNQALPASELAYMAKVSHPTISSHLSKLVEGNLLTVEQHGRHRYYRLANQEVA
EVLEKLGTIAPTVQVRSLKQSTQLKQIRYARTCYDHLAGKLGVEITEKLLDRQFIILEGGEYIVTEQGKKWFLNFGINVD
EADTKRRVFAKPCLDWSERRYHISGWLGSAIAKLFFEQGWITKTDKNRAVHLTKKGVKLLEDQLGIDMKTEERKV

Specific function: Unknown

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 26885; Mature: 26885

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVYPNISYIAKLIAEPTRAIILDCLMNNQALPASELAYMAKVSHPTISSHLSKLVEGNL
CCCCCCHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCE
LTVEQHGRHRYYRLANQEVAEVLEKLGTIAPTVQVRSLKQSTQLKQIRYARTCYDHLAGK
EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGVEITEKLLDRQFIILEGGEYIVTEQGKKWFLNFGINVDEADTKRRVFAKPCLDWSERR
HHHHHHHHHHCCEEEEEECCCEEEECCCCEEEEEECCCCCCCHHHHHHHHHHCCCHHHCE
YHISGWLGSAIAKLFFEQGWITKTDKNRAVHLTKKGVKLLEDQLGIDMKTEERKV
EEEHHHHHHHHHHHHHHCCCCEECCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MNVYPNISYIAKLIAEPTRAIILDCLMNNQALPASELAYMAKVSHPTISSHLSKLVEGNL
CCCCCCHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCE
LTVEQHGRHRYYRLANQEVAEVLEKLGTIAPTVQVRSLKQSTQLKQIRYARTCYDHLAGK
EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGVEITEKLLDRQFIILEGGEYIVTEQGKKWFLNFGINVDEADTKRRVFAKPCLDWSERR
HHHHHHHHHHCCEEEEEECCCEEEECCCCEEEEEECCCCCCCHHHHHHHHHHCCCHHHCE
YHISGWLGSAIAKLFFEQGWITKTDKNRAVHLTKKGVKLLEDQLGIDMKTEERKV
EEEHHHHHHHHHHHHHHCCCCEECCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]