Click here to switch to the map view.

The map label for this gene is yjcD [H]

Identifier: 218232735

GI number: 218232735

Start: 1241230

End: 1243296

Strand: Reverse

Name: yjcD [H]

Synonym: BCB4264_A1279

Alternate gene names: 218232735

Gene position: 1243296-1241230 (Counterclockwise)

Preceding gene: 218232575

Following gene: 218231869

Centisome position: 22.94

GC content: 34.98

Gene sequence:

>2067_bases
ATGACACAAGAAAAATTTTCACAAAAATCGTTAACACACGCTGATATTCCGCGTGCGACATATCATATTCCGAAAACATC
TACCCATTTAATTATGGAAGAAGATGTAGATGCGGCTTATTTCCGCGCTCTTGAACAACAAAATGTTTTTTTAAACGAAA
AACAATTAGAAGCCGTGCGCACAACAGAAGGTCCTGTTCTTACACTAGCTGGTGCCGGAAGCGGGAAAACATCTGTTTTA
ACAACTCGCGTTGGTTATTTAGTAAATGTAAAACAAGTTCATCCACGAAATATTTTATTACTTACATTTACACAAAAAGC
AGCTGAAGAAATACGAAGTCGTGTTGCGAAGTTACCAGGCATGAATCATGCAGCAAGTAGCTACGTAGTTGCTGGTACAT
TCCACTCTGTTTTCTTAAAATTGCTTCGTAGCCAAGGGTATAATCAGCAAATTTTAGCAAATGAAAAACATAAACAAATT
ATGATAAAGAAAATCTTAAAAGAATTGCGTTTAAAAGACGATTATGATGCGGAAACGATGCTCGCGATGATTTCACTTGA
GAAAAACAAATTAAATCGTCCGAAAGATGTAAAAGCGAAAACACCAGTGGAACAAGAATTTAAAGAAGTATATGAACGTT
TTGAAGAGGTAAAACAACGATACAATTATATTGATTTCGATGACATCTTATTGGAAACATATTACATGTTAGAAAATAAT
GCTCCTTTACTAACTCAATTACAACAACGGTTTCACTACATTGAAGTCGATGAGTTTCAAGATACATCCTATGCACAATA
TGAAATTGTAAAATTGTTAGCCACGCCAAGAAATAATTTGTTCATCGCAGGTGATGATGATCAAGCAATTTATGGTTGGC
GAGGGGCAAGTCACCAAATTATTTTATCTTTTCCCAAAGAATTTGATAACACAACAATCATTGCACTAAATACGAATTAT
CGATCCAATCCCTTTATCGTCGGGCTTGGAAATGAAGTTATAAAATTAAATCAAGAACGTTTTGATAAAGAGCTATACTC
TGTTCGTGAGGAAGGTGTACAACCTTTTTATGCAAGACCTGCTACGACTCTTGACGAAGCAAATCAAATTTTGCAGCTTA
TTCAAGAAAAAGTAGAGAGTGGTGAACGTAACTTTAAAGATTTTTGTTTACTGTATCGCACACATTCTGTAAGTCGTTCG
TTACTTGATCAGCTTACCATTCATAAAATCCCGTTTATTAAACACGGGGCGAGCCAATCATTTTATGAACATTCTTTAAT
CAAGCCTGTATTAGATCATTTAAGACTCGTGATTGAGCCGTTTCGACTAGAATCACTTTCAAACATATTGCCGACGATGT
ATATCGGACGTGATGATTGTATTTCATTTATTGAACGTGAACAATGGAAATATGGTGAGGGACGCTTCCCTTCTCTTCTT
CATTTCTTACTATTAAATCCAAGCTTAAAACCTTTTCAAGTGAAAAAGGTAAATGAGCGCATCGATTTTATTAAGTTTAT
TAAAGAATTAGAACCGAAAAAAGCATTAAAAGAAATCATTCATGGTAAAGGAAAATATTTAGAGTACTTACAAAGTAACG
ATCGTTCTTCCTTTACGATGCATAAAGACATACAAGAAGAAATGTTGGAAGAATTAATGGAGTCTGCAACTCGTTTCACC
GATATTCCAGCTTATTTACAATTTATCGACGAAGCGATTCAAGGTCAAAAAGAAATGGAAGCATTAAAAACAATGCCGCA
AAAAGATGCCGTTTCACTTATGTCAATCCATAACGCAAAAGGCCTTGAATTTCCATGTGTCTTTTTACTTGGAGCAAGTG
ATGGAATCCTGCCTCATACTTCTTCTTTAAAAGATGCAAATGATCGTGTTACGGAAACTTCTGAAGCGTTAGAAGAAGAA
CGCCGATTACTGTATGTCGCCATTACACGTGCGAAAGAAGAACTTTATATTTCTTCTCCGCAATTTTTCAGAGGAAAGAA
ATTAGATATATCTCGTTTTTTATATACTGTGCGAAAAGATTTACCTGAAAAGACATCCACTAAATAA

Upstream 100 bases:

>100_bases
TTTATGGGGTCAGTTCAACCCCTCCTGTTTTTTTACATTGCTATTTTCTTTTTCTTCCGCTAAAGTTAAATGTTGATGCT
ATAGTTTTGAAGGTGAACAT

Downstream 100 bases:

>100_bases
GGATGTCTTTTTTTATATCACGTTATGTACATCCCTCCTATATAAATTCCTTGTTTTTATCGTGAGAATTAACGTAATAT
CAGCCATATTCCACTCATAT

Product: ATP-dependent DNA helicase, UvrD/REP family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 688; Mature: 687

Protein sequence:

>688_residues
MTQEKFSQKSLTHADIPRATYHIPKTSTHLIMEEDVDAAYFRALEQQNVFLNEKQLEAVRTTEGPVLTLAGAGSGKTSVL
TTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRVAKLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQI
MIKKILKELRLKDDYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYIDFDDILLETYYMLENN
APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLATPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDNTTIIALNTNY
RSNPFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLDEANQILQLIQEKVESGERNFKDFCLLYRTHSVSRS
LLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYIGRDDCISFIEREQWKYGEGRFPSLL
HFLLLNPSLKPFQVKKVNERIDFIKFIKELEPKKALKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESATRFT
DIPAYLQFIDEAIQGQKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKDANDRVTETSEALEEE
RRLLYVAITRAKEELYISSPQFFRGKKLDISRFLYTVRKDLPEKTSTK

Sequences:

>Translated_688_residues
MTQEKFSQKSLTHADIPRATYHIPKTSTHLIMEEDVDAAYFRALEQQNVFLNEKQLEAVRTTEGPVLTLAGAGSGKTSVL
TTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRVAKLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQI
MIKKILKELRLKDDYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYIDFDDILLETYYMLENN
APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLATPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDNTTIIALNTNY
RSNPFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLDEANQILQLIQEKVESGERNFKDFCLLYRTHSVSRS
LLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYIGRDDCISFIEREQWKYGEGRFPSLL
HFLLLNPSLKPFQVKKVNERIDFIKFIKELEPKKALKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESATRFT
DIPAYLQFIDEAIQGQKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKDANDRVTETSEALEEE
RRLLYVAITRAKEELYISSPQFFRGKKLDISRFLYTVRKDLPEKTSTK
>Mature_687_residues
TQEKFSQKSLTHADIPRATYHIPKTSTHLIMEEDVDAAYFRALEQQNVFLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLT
TRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRVAKLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIM
IKKILKELRLKDDYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYIDFDDILLETYYMLENNA
PLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLATPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDNTTIIALNTNYR
SNPFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLDEANQILQLIQEKVESGERNFKDFCLLYRTHSVSRSL
LDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYIGRDDCISFIEREQWKYGEGRFPSLLH
FLLLNPSLKPFQVKKVNERIDFIKFIKELEPKKALKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESATRFTD
IPAYLQFIDEAIQGQKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKDANDRVTETSEALEEER
RLLYVAITRAKEELYISSPQFFRGKKLDISRFLYTVRKDLPEKTSTK

Specific function: May be involved in the generation of recombinogenic substrates for the subsequent action of recA [H]

COG id: COG0210

COG function: function code L; Superfamily I DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 uvrD-like helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI2367296, Length=675, Percent_Identity=31.4074074074074, Blast_Score=266, Evalue=3e-72,
Organism=Escherichia coli, GI48994965, Length=628, Percent_Identity=30.5732484076433, Blast_Score=239, Evalue=3e-64,
Organism=Escherichia coli, GI1787196, Length=382, Percent_Identity=27.2251308900524, Blast_Score=103, Evalue=4e-23,
Organism=Saccharomyces cerevisiae, GI6322369, Length=413, Percent_Identity=28.3292978208232, Blast_Score=121, Evalue=3e-28,
Organism=Saccharomyces cerevisiae, GI6324477, Length=419, Percent_Identity=23.1503579952267, Blast_Score=77, Evalue=9e-15,

Paralogues:

None

Copy number: 3000 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014017
- InterPro:   IPR000212
- InterPro:   IPR014016 [H]

Pfam domain/function: PF00580 UvrD-helicase [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 79685; Mature: 79554

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQEKFSQKSLTHADIPRATYHIPKTSTHLIMEEDVDAAYFRALEQQNVFLNEKQLEAVR
CCCHHHHHHCCCCCCCCCCEEECCCCCCEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHH
TTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRVAKLPG
CCCCCEEEEEECCCCCCCCCEEHHHHEEEEEEECCCEEEEEEECHHHHHHHHHHHHHCCC
MNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKKILKELRLKDDYDAETM
CCCCCCCEEEEHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHH
LAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYIDFDDILLETYYMLENN
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLATPRNNLFIAGDDDQAIYGWRGASHQI
CCHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCEEEEECCCCCCE
ILSFPKEFDNTTIIALNTNYRSNPFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARP
EEECCCCCCCCEEEEEECCCCCCCEEEECCCHHHHCCHHHHHHHHHHHHHHCCCCEECCC
ATTLDEANQILQLIQEKVESGERNFKDFCLLYRTHSVSRSLLDQLTIHKIPFIKHGASQS
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCH
FYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYIGRDDCISFIEREQWKYGEGRFPSLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHH
HFLLLNPSLKPFQVKKVNERIDFIKFIKELEPKKALKEIIHGKGKYLEYLQSNDRSSFTM
HHHHHCCCCCCEEHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCHH
HKDIQEEMLEELMESATRFTDIPAYLQFIDEAIQGQKEMEALKTMPQKDAVSLMSIHNAK
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCC
GLEFPCVFLLGASDGILPHTSSLKDANDRVTETSEALEEERRLLYVAITRAKEELYISSP
CCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEEEEECCHHHHEECCC
QFFRGKKLDISRFLYTVRKDLPEKTSTK
CHHCCCCCHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TQEKFSQKSLTHADIPRATYHIPKTSTHLIMEEDVDAAYFRALEQQNVFLNEKQLEAVR
CCHHHHHHCCCCCCCCCCEEECCCCCCEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHH
TTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRVAKLPG
CCCCCEEEEEECCCCCCCCCEEHHHHEEEEEEECCCEEEEEEECHHHHHHHHHHHHHCCC
MNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKKILKELRLKDDYDAETM
CCCCCCCEEEEHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHH
LAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYIDFDDILLETYYMLENN
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLATPRNNLFIAGDDDQAIYGWRGASHQI
CCHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCEEEEECCCCCCE
ILSFPKEFDNTTIIALNTNYRSNPFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARP
EEECCCCCCCCEEEEEECCCCCCCEEEECCCHHHHCCHHHHHHHHHHHHHHCCCCEECCC
ATTLDEANQILQLIQEKVESGERNFKDFCLLYRTHSVSRSLLDQLTIHKIPFIKHGASQS
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCH
FYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYIGRDDCISFIEREQWKYGEGRFPSLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHH
HFLLLNPSLKPFQVKKVNERIDFIKFIKELEPKKALKEIIHGKGKYLEYLQSNDRSSFTM
HHHHHCCCCCCEEHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCHH
HKDIQEEMLEELMESATRFTDIPAYLQFIDEAIQGQKEMEALKTMPQKDAVSLMSIHNAK
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCC
GLEFPCVFLLGASDGILPHTSSLKDANDRVTETSEALEEERRLLYVAITRAKEELYISSP
CCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEEEEECCHHHHEECCC
QFFRGKKLDISRFLYTVRKDLPEKTSTK
CHHCCCCCHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]