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The map label for this gene is dppE [H]

Identifier: 218232568

GI number: 218232568

Start: 3609811

End: 3611505

Strand: Reverse

Name: dppE [H]

Synonym: BCB4264_A3694

Alternate gene names: 218232568

Gene position: 3611505-3609811 (Counterclockwise)

Preceding gene: 218231950

Following gene: 218233159

Centisome position: 66.64

GC content: 35.04

Gene sequence:

>1695_bases
ATGAAGAGAAAAAAGATGAAAAAATTGACAGCGGTCGTAGCACCAGTTTTAGTAATGAGTATGGCATTAACAGCTTGCTC
TGGATCAGGAGATAAAGAGAAGGCAAGCACAACACCGAAAAGTGGTGAAAAAGAAGGCGGAAAGTTAGCGGCGAAGCAAG
TGCTTAATTTAACAGAGTCTCAAGAGATTCCATCTATGGACTCTGCTAAAGCGACAGACCAAGTATCGTTTCTAGCTTTA
AACAACGTAATGGAAGGTTTATATCGACTTGATAAAGATAATAAGGCAGCTCCAGGGGTTGCTGAATCATATAAAAAGAG
TGATGATGGTAAAAAGTATACATTTACATTAAATAAAAATGCAAAATGGTCAAATGGAGACCCTGTAACAGCGAAGGATT
TCGTGTTTGCTTGGAAACGTGCGGTAGATAAAAATACAGCAGCGGAATATGCATACATTATGTTTGATTTAAAGAACGCA
AAAGCAATTAATGATGGGAAAGCACCACTTGATACGTTAGGTGTAAAAGCTGTAGATGATTACACATTAGAGGTAGAATT
AGAAAATCCAGTTCCTTACTTTGTAGAATTAACTTCATTCGGAACATTCTATCCGTTAAATGAAAAATTCGTAAAAGAAA
AAGGTGAAAAATTTGGTTTAGAAGCAGATACAACGTTATACAACGGACCATTTACATTAACAGACTGGAAACATGAAGAA
GGATGGAAATTAAAGAAAAATGCACAATATTGGGATAATAAAACAGTTAAGTTAGATGAAATCAACTTTAACGTAGTAAA
AGATAGCGGTACACGTGTAAACTTATATGAAAGTGGACAAATCGATCGTGCGGGACTTACATCTGAAATGGTTGACAAAT
ATAAATCAAATCCAGACTTCTATACACAAAAAACACCATCAACGTTCTTCTTACGTTTAAACCAAAAACGTGGTGGGCAA
GATACAGTATTAAAAAACAAAGATTTACGTTTAGCGATTGCAAAGGCATATGATAAAAAAGGCTTAACGAACGTTATTTT
AAATGACGGATCTACACCGGCAGATTACTTAGTACCAAAAGAATTTGCGAAGAGTCCAGATGGAAAAGACTTCCGTAAAG
ATAACGGAGATATTTTAAAAACAGATGTGAAAAAAGCAAAAGAGCATTGGGAAAAAGCGAAAAAAGAACTTGGAAAAGAG
CAAGTAACGATTGAGCTATTAAACTACGATAGCGATAATGCGAAAAAAGTAGGGGAGTTCTTAAAAGGAGAACTTGAGAA
AAACTTACCAGGGTTAACAGTGAACTTGAAAAATCAACCGTTTAAACAAAAGTTAAAATTAGAATCAGATTTAGATTATG
ATTTATCTTACGCTGGTTGGGGCCCTGATTACTTAGATCCAATGACATTCATTGATATGTTCGTTACAAATGGTCCTCAT
AACCAAACTGGATATTCAAATCCAAAATATGATGAAATTGTAGAAAAAGGTAAAGGCGAGCTATTAACGAAAACGAAAGA
ACGTTGGGATAGCTTACTAAAAGCTGAGAAAATGTTACTTGATGATGCTGTAATTGCACCATTATATCAACGTGGTGATG
CTATCGTTCAAAGACAGAAAGTAAAAGGTATTGTTCACCATCCAGTTGGTGGAGACTACAGCTATAAATGGGCATATATT
ACAGAGGATAAATAA

Upstream 100 bases:

>100_bases
ACAGTAGAATATTAATTAATAAGAATTTTCTGATAACGAAAGTTAGTAGAGAATTTCTAAATGTTAATATCGTACATATA
ATTGGGGAGGGTACAAAAAA

Downstream 100 bases:

>100_bases
GATGAGGGGCGTACAATACGCCCCCTTTTTCTATGCACTTTTCTTCCGTCCTCGAATATATAAAATAAAAAAGGGAGAAT
CCCATGAAACGAAACACATA

Product: oligopeptide-binding protein OppA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 564; Mature: 564

Protein sequence:

>564_residues
MKRKKMKKLTAVVAPVLVMSMALTACSGSGDKEKASTTPKSGEKEGGKLAAKQVLNLTESQEIPSMDSAKATDQVSFLAL
NNVMEGLYRLDKDNKAAPGVAESYKKSDDGKKYTFTLNKNAKWSNGDPVTAKDFVFAWKRAVDKNTAAEYAYIMFDLKNA
KAINDGKAPLDTLGVKAVDDYTLEVELENPVPYFVELTSFGTFYPLNEKFVKEKGEKFGLEADTTLYNGPFTLTDWKHEE
GWKLKKNAQYWDNKTVKLDEINFNVVKDSGTRVNLYESGQIDRAGLTSEMVDKYKSNPDFYTQKTPSTFFLRLNQKRGGQ
DTVLKNKDLRLAIAKAYDKKGLTNVILNDGSTPADYLVPKEFAKSPDGKDFRKDNGDILKTDVKKAKEHWEKAKKELGKE
QVTIELLNYDSDNAKKVGEFLKGELEKNLPGLTVNLKNQPFKQKLKLESDLDYDLSYAGWGPDYLDPMTFIDMFVTNGPH
NQTGYSNPKYDEIVEKGKGELLTKTKERWDSLLKAEKMLLDDAVIAPLYQRGDAIVQRQKVKGIVHHPVGGDYSYKWAYI
TEDK

Sequences:

>Translated_564_residues
MKRKKMKKLTAVVAPVLVMSMALTACSGSGDKEKASTTPKSGEKEGGKLAAKQVLNLTESQEIPSMDSAKATDQVSFLAL
NNVMEGLYRLDKDNKAAPGVAESYKKSDDGKKYTFTLNKNAKWSNGDPVTAKDFVFAWKRAVDKNTAAEYAYIMFDLKNA
KAINDGKAPLDTLGVKAVDDYTLEVELENPVPYFVELTSFGTFYPLNEKFVKEKGEKFGLEADTTLYNGPFTLTDWKHEE
GWKLKKNAQYWDNKTVKLDEINFNVVKDSGTRVNLYESGQIDRAGLTSEMVDKYKSNPDFYTQKTPSTFFLRLNQKRGGQ
DTVLKNKDLRLAIAKAYDKKGLTNVILNDGSTPADYLVPKEFAKSPDGKDFRKDNGDILKTDVKKAKEHWEKAKKELGKE
QVTIELLNYDSDNAKKVGEFLKGELEKNLPGLTVNLKNQPFKQKLKLESDLDYDLSYAGWGPDYLDPMTFIDMFVTNGPH
NQTGYSNPKYDEIVEKGKGELLTKTKERWDSLLKAEKMLLDDAVIAPLYQRGDAIVQRQKVKGIVHHPVGGDYSYKWAYI
TEDK
>Mature_564_residues
MKRKKMKKLTAVVAPVLVMSMALTACSGSGDKEKASTTPKSGEKEGGKLAAKQVLNLTESQEIPSMDSAKATDQVSFLAL
NNVMEGLYRLDKDNKAAPGVAESYKKSDDGKKYTFTLNKNAKWSNGDPVTAKDFVFAWKRAVDKNTAAEYAYIMFDLKNA
KAINDGKAPLDTLGVKAVDDYTLEVELENPVPYFVELTSFGTFYPLNEKFVKEKGEKFGLEADTTLYNGPFTLTDWKHEE
GWKLKKNAQYWDNKTVKLDEINFNVVKDSGTRVNLYESGQIDRAGLTSEMVDKYKSNPDFYTQKTPSTFFLRLNQKRGGQ
DTVLKNKDLRLAIAKAYDKKGLTNVILNDGSTPADYLVPKEFAKSPDGKDFRKDNGDILKTDVKKAKEHWEKAKKELGKE
QVTIELLNYDSDNAKKVGEFLKGELEKNLPGLTVNLKNQPFKQKLKLESDLDYDLSYAGWGPDYLDPMTFIDMFVTNGPH
NQTGYSNPKYDEIVEKGKGELLTKTKERWDSLLKAEKMLLDDAVIAPLYQRGDAIVQRQKVKGIVHHPVGGDYSYKWAYI
TEDK

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the binding of dipeptides with high affinity. Is expressed to facilitate adaptation to nutrient deficiency conditions, which also induce sporulation [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI87081878, Length=545, Percent_Identity=30.0917431192661, Blast_Score=217, Evalue=2e-57,
Organism=Escherichia coli, GI1787495, Length=550, Percent_Identity=31.8181818181818, Blast_Score=217, Evalue=2e-57,
Organism=Escherichia coli, GI1789397, Length=516, Percent_Identity=26.937984496124, Blast_Score=176, Evalue=4e-45,
Organism=Escherichia coli, GI1787762, Length=461, Percent_Identity=25.5965292841649, Blast_Score=113, Evalue=4e-26,
Organism=Escherichia coli, GI1789887, Length=504, Percent_Identity=24.2063492063492, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1787052, Length=382, Percent_Identity=24.3455497382199, Blast_Score=80, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 63497; Mature: 63497

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKKMKKLTAVVAPVLVMSMALTACSGSGDKEKASTTPKSGEKEGGKLAAKQVLNLTES
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
QEIPSMDSAKATDQVSFLALNNVMEGLYRLDKDNKAAPGVAESYKKSDDGKKYTFTLNKN
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCEEEEEECCC
AKWSNGDPVTAKDFVFAWKRAVDKNTAAEYAYIMFDLKNAKAINDGKAPLDTLGVKAVDD
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCHHHCCCEEECC
YTLEVELENPVPYFVELTSFGTFYPLNEKFVKEKGEKFGLEADTTLYNGPFTLTDWKHEE
EEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHCCHHCCCCCCCEEECCCEEEECCCCCC
GWKLKKNAQYWDNKTVKLDEINFNVVKDSGTRVNLYESGQIDRAGLTSEMVDKYKSNPDF
CCCCCCCCCCCCCCCEEEEECEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCC
YTQKTPSTFFLRLNQKRGGQDTVLKNKDLRLAIAKAYDKKGLTNVILNDGSTPADYLVPK
EECCCCCEEEEEEECCCCCCCCEECCCCCEEEEEHHHCCCCCCEEEECCCCCCHHHCCCH
EFAKSPDGKDFRKDNGDILKTDVKKAKEHWEKAKKELGKEQVTIELLNYDSDNAKKVGEF
HHHCCCCCCCHHCCCCCEEHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHH
LKGELEKNLPGLTVNLKNQPFKQKLKLESDLDYDLSYAGWGPDYLDPMTFIDMFVTNGPH
HHHHHHHCCCCEEEEECCCCHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCC
NQTGYSNPKYDEIVEKGKGELLTKTKERWDSLLKAEKMLLDDAVIAPLYQRGDAIVQRQK
CCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
VKGIVHHPVGGDYSYKWAYITEDK
HCCEEECCCCCCCEEEEEEEECCC
>Mature Secondary Structure
MKRKKMKKLTAVVAPVLVMSMALTACSGSGDKEKASTTPKSGEKEGGKLAAKQVLNLTES
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
QEIPSMDSAKATDQVSFLALNNVMEGLYRLDKDNKAAPGVAESYKKSDDGKKYTFTLNKN
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCEEEEEECCC
AKWSNGDPVTAKDFVFAWKRAVDKNTAAEYAYIMFDLKNAKAINDGKAPLDTLGVKAVDD
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCHHHCCCEEECC
YTLEVELENPVPYFVELTSFGTFYPLNEKFVKEKGEKFGLEADTTLYNGPFTLTDWKHEE
EEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHCCHHCCCCCCCEEECCCEEEECCCCCC
GWKLKKNAQYWDNKTVKLDEINFNVVKDSGTRVNLYESGQIDRAGLTSEMVDKYKSNPDF
CCCCCCCCCCCCCCCEEEEECEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCC
YTQKTPSTFFLRLNQKRGGQDTVLKNKDLRLAIAKAYDKKGLTNVILNDGSTPADYLVPK
EECCCCCEEEEEEECCCCCCCCEECCCCCEEEEEHHHCCCCCCEEEECCCCCCHHHCCCH
EFAKSPDGKDFRKDNGDILKTDVKKAKEHWEKAKKELGKEQVTIELLNYDSDNAKKVGEF
HHHCCCCCCCHHCCCCCEEHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHH
LKGELEKNLPGLTVNLKNQPFKQKLKLESDLDYDLSYAGWGPDYLDPMTFIDMFVTNGPH
HHHHHHHCCCCEEEEECCCCHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCC
NQTGYSNPKYDEIVEKGKGELLTKTKERWDSLLKAEKMLLDDAVIAPLYQRGDAIVQRQK
CCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
VKGIVHHPVGGDYSYKWAYITEDK
HCCEEECCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377 [H]