Click here to switch to the map view.

The map label for this gene is yhgD [H]

Identifier: 218232519

GI number: 218232519

Start: 1089893

End: 1090465

Strand: Direct

Name: yhgD [H]

Synonym: BCB4264_A1112

Alternate gene names: 218232519

Gene position: 1089893-1090465 (Clockwise)

Preceding gene: 218233788

Following gene: 218231337

Centisome position: 20.11

GC content: 31.41

Gene sequence:

>573_bases
GTGGCGATAGATCGAAAACGTTCTATTATTGAAGCTGCAACAAAGTCTTTTTCAGCGTTCGGTTATAAAGCAACAACGAT
GGATCAAGTAGCGAAGTTAGCGAATGTAGGAAAAGGAACGATTTATACTTTTTTCAAAAATAAAGAAGAGCTATTTGGTG
AAATTATTTCTAATTTAATTACAGAAATGAAGCAAGTTGCAGAAAGTGCAATTCGTTCAGATGTTTCATTTTTTGAAAAT
GTACATAGAGCATTATATAGCATCTTGGAATTTAGAAAAGAACATCAGCTTATGATTAAATTAATTCAAGAAGAGCGCGA
TATGGGAACGAAAGAAGTACAAGAAGTTATGCAGCAAGTTGATGTGGAAATCGTTTCTGTTATTCAATCGTATTTAAAGA
TTGCGATTGAAAAAGGTGAAATTAGCAAATGTGATCCAGAAATTACAGCATTTATTATGCTTCGTCTATATGTATCGCTT
ATTTTTGATTGGGAAAAAAATCATGAACCGCTAGAAAAAGAAAAAATTGCAGAGTTATTTGAACTTTATTTACTAAAAGG
ATTGTCAAACTAA

Upstream 100 bases:

>100_bases
ATAATAAAAAGAGAACTTGTATAGAATGTAAGCGTGTGGTAATATCAAAGATGTACTGATTGACTATATTATCCAATCGG
TCATTTTTGGAGGTGACAAT

Downstream 100 bases:

>100_bases
GATAATCCTTTTAATTTTATAAAAAAATGACCGAATGAACAATATGGTCATATATTTAAGTTAAGGGGGGATATAGAAAA
AATATAATCATAATGAGAAA

Product: transcriptional regulator, TetR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MAIDRKRSIIEAATKSFSAFGYKATTMDQVAKLANVGKGTIYTFFKNKEELFGEIISNLITEMKQVAESAIRSDVSFFEN
VHRALYSILEFRKEHQLMIKLIQEERDMGTKEVQEVMQQVDVEIVSVIQSYLKIAIEKGEISKCDPEITAFIMLRLYVSL
IFDWEKNHEPLEKEKIAELFELYLLKGLSN

Sequences:

>Translated_190_residues
MAIDRKRSIIEAATKSFSAFGYKATTMDQVAKLANVGKGTIYTFFKNKEELFGEIISNLITEMKQVAESAIRSDVSFFEN
VHRALYSILEFRKEHQLMIKLIQEERDMGTKEVQEVMQQVDVEIVSVIQSYLKIAIEKGEISKCDPEITAFIMLRLYVSL
IFDWEKNHEPLEKEKIAELFELYLLKGLSN
>Mature_189_residues
AIDRKRSIIEAATKSFSAFGYKATTMDQVAKLANVGKGTIYTFFKNKEELFGEIISNLITEMKQVAESAIRSDVSFFENV
HRALYSILEFRKEHQLMIKLIQEERDMGTKEVQEVMQQVDVEIVSVIQSYLKIAIEKGEISKCDPEITAFIMLRLYVSLI
FDWEKNHEPLEKEKIAELFELYLLKGLSN

Specific function: Potential Regulator Protein For The Acref/Envcd Genes. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21956; Mature: 21825

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIDRKRSIIEAATKSFSAFGYKATTMDQVAKLANVGKGTIYTFFKNKEELFGEIISNLI
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHH
TEMKQVAESAIRSDVSFFENVHRALYSILEFRKEHQLMIKLIQEERDMGTKEVQEVMQQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
DVEIVSVIQSYLKIAIEKGEISKCDPEITAFIMLRLYVSLIFDWEKNHEPLEKEKIAELF
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
ELYLLKGLSN
HHHHHHHCCC
>Mature Secondary Structure 
AIDRKRSIIEAATKSFSAFGYKATTMDQVAKLANVGKGTIYTFFKNKEELFGEIISNLI
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHH
TEMKQVAESAIRSDVSFFENVHRALYSILEFRKEHQLMIKLIQEERDMGTKEVQEVMQQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
DVEIVSVIQSYLKIAIEKGEISKCDPEITAFIMLRLYVSLIFDWEKNHEPLEKEKIAELF
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
ELYLLKGLSN
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1459957; 9579061; 9384377 [H]