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The map label for this gene is sodF [H]

Identifier: 218232247

GI number: 218232247

Start: 1458306

End: 1459220

Strand: Direct

Name: sodF [H]

Synonym: BCB4264_A1523

Alternate gene names: 218232247

Gene position: 1458306-1459220 (Clockwise)

Preceding gene: 218234740

Following gene: 218232835

Centisome position: 26.91

GC content: 36.39

Gene sequence:

>915_bases
ATGAATCAGCAAGGTGTATTTACAGATTACTTTCATGAAGTAGAAAATTGGTGTGAAAGTGTTCTTCACGTATTAGATAG
TCGCGCAATGGAAGTGTATGATGTCCATATGCTTGCTTATAAAATTCAGACGTTATTAGAGCGTATGAAAGAGCATGAGT
ATGAAACAGATGCAGAGTTTATGTATGAAATAAGCGATGATGTAGAACATATTCAGCATCACTTGCAGGAAGTATTTATG
CAAGAAGAAGAGGAATATGAATTATATGAAAGAGGGGATAGTGAACGAGCTGTCCCAATTGGAGGACATACACTCCCGCC
ATTACCTTATCCGTATAATGCATTAGAACCGTATATTTCTAAAGAAATTATGATGTTACATCATGATAAACATCATCGGA
GTTACGTGGAAGGATTAAATAAAGCAGAGAAGATGATGGAAGAAGCGAGAAAAACAAATAAATTTGATTTAATTAAGCAT
TGGGAAAGGGAAGCGGCTTTTCATGGGTCAGGTCATTACTTACACACGATATTTTGGAATAACATGAAAAAAGACGGTGG
TGGAAGTCCAAGAGGAACTTTTTCACAACAAATTGAACAAGATTTTGGGAGCTTTTTACGTTTCCAAAAACATTTTACAG
AAGCAGCCTCTAAAGTAGAAGGTTCAGGCTGGGCAATTCTCGTTTGGGTACCCCGGTCTGGAAGGTTAGAAATTTTGCAA
AGTACACTTCATCAATTATTTACACAATGGGATACGATACCGCTCCTTGTACTAGATGTCTGGGAGCATGCGTATTATTT
ACAATACCAAAATCGAAAAGATGAATATATTAAAAACTGGTGGAATGTTGTAAATTGGCCTGATGTAGAAAAAAGGTTTG
AAACTGCGAAACAAATTGAATGGACACCATATTAG

Upstream 100 bases:

>100_bases
GAAAAGAAGCTAAGGTGACTTAGCTTCTTTTCCTTTTGTACAGTTATATAAGGGATTTTCATTGAATATAGTTAAGTGGA
TAGCATTAGGGAGGTGCAAC

Downstream 100 bases:

>100_bases
ACGCAAATTCTCTGCGTCTTTTTTAATGGAAGTAGAAGGAAGATTTCGTTCATATTTTAAAAGGCCAAGCATACACTTGT
ACAAAAAGTGCCAAAAGGAC

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MNQQGVFTDYFHEVENWCESVLHVLDSRAMEVYDVHMLAYKIQTLLERMKEHEYETDAEFMYEISDDVEHIQHHLQEVFM
QEEEEYELYERGDSERAVPIGGHTLPPLPYPYNALEPYISKEIMMLHHDKHHRSYVEGLNKAEKMMEEARKTNKFDLIKH
WEREAAFHGSGHYLHTIFWNNMKKDGGGSPRGTFSQQIEQDFGSFLRFQKHFTEAASKVEGSGWAILVWVPRSGRLEILQ
STLHQLFTQWDTIPLLVLDVWEHAYYLQYQNRKDEYIKNWWNVVNWPDVEKRFETAKQIEWTPY

Sequences:

>Translated_304_residues
MNQQGVFTDYFHEVENWCESVLHVLDSRAMEVYDVHMLAYKIQTLLERMKEHEYETDAEFMYEISDDVEHIQHHLQEVFM
QEEEEYELYERGDSERAVPIGGHTLPPLPYPYNALEPYISKEIMMLHHDKHHRSYVEGLNKAEKMMEEARKTNKFDLIKH
WEREAAFHGSGHYLHTIFWNNMKKDGGGSPRGTFSQQIEQDFGSFLRFQKHFTEAASKVEGSGWAILVWVPRSGRLEILQ
STLHQLFTQWDTIPLLVLDVWEHAYYLQYQNRKDEYIKNWWNVVNWPDVEKRFETAKQIEWTPY
>Mature_304_residues
MNQQGVFTDYFHEVENWCESVLHVLDSRAMEVYDVHMLAYKIQTLLERMKEHEYETDAEFMYEISDDVEHIQHHLQEVFM
QEEEEYELYERGDSERAVPIGGHTLPPLPYPYNALEPYISKEIMMLHHDKHHRSYVEGLNKAEKMMEEARKTNKFDLIKH
WEREAAFHGSGHYLHTIFWNNMKKDGGGSPRGTFSQQIEQDFGSFLRFQKHFTEAASKVEGSGWAILVWVPRSGRLEILQ
STLHQLFTQWDTIPLLVLDVWEHAYYLQYQNRKDEYIKNWWNVVNWPDVEKRFETAKQIEWTPY

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=216, Percent_Identity=42.5925925925926, Blast_Score=177, Evalue=1e-44,
Organism=Homo sapiens, GI67782305, Length=216, Percent_Identity=42.5925925925926, Blast_Score=177, Evalue=1e-44,
Organism=Homo sapiens, GI67782309, Length=216, Percent_Identity=36.5740740740741, Blast_Score=131, Evalue=8e-31,
Organism=Escherichia coli, GI1790342, Length=208, Percent_Identity=37.9807692307692, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1787946, Length=189, Percent_Identity=38.0952380952381, Blast_Score=134, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI17506561, Length=217, Percent_Identity=40.0921658986175, Blast_Score=163, Evalue=8e-41,
Organism=Caenorhabditis elegans, GI17569479, Length=215, Percent_Identity=39.0697674418605, Blast_Score=159, Evalue=2e-39,
Organism=Saccharomyces cerevisiae, GI6321796, Length=206, Percent_Identity=38.8349514563107, Blast_Score=150, Evalue=2e-37,
Organism=Drosophila melanogaster, GI17136812, Length=200, Percent_Identity=41.5, Blast_Score=162, Evalue=3e-40,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 36479; Mature: 36479

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQQGVFTDYFHEVENWCESVLHVLDSRAMEVYDVHMLAYKIQTLLERMKEHEYETDAEF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
MYEISDDVEHIQHHLQEVFMQEEEEYELYERGDSERAVPIGGHTLPPLPYPYNALEPYIS
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEECCCCCCCCCCCCCCHHHHHHHH
KEIMMLHHDKHHRSYVEGLNKAEKMMEEARKTNKFDLIKHWEREAAFHGSGHYLHTIFWN
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEEEC
NMKKDGGGSPRGTFSQQIEQDFGSFLRFQKHFTEAASKVEGSGWAILVWVPRSGRLEILQ
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHH
STLHQLFTQWDTIPLLVLDVWEHAYYLQYQNRKDEYIKNWWNVVNWPDVEKRFETAKQIE
HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCC
WTPY
CCCC
>Mature Secondary Structure
MNQQGVFTDYFHEVENWCESVLHVLDSRAMEVYDVHMLAYKIQTLLERMKEHEYETDAEF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
MYEISDDVEHIQHHLQEVFMQEEEEYELYERGDSERAVPIGGHTLPPLPYPYNALEPYIS
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEECCCCCCCCCCCCCCHHHHHHHH
KEIMMLHHDKHHRSYVEGLNKAEKMMEEARKTNKFDLIKHWEREAAFHGSGHYLHTIFWN
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEEEC
NMKKDGGGSPRGTFSQQIEQDFGSFLRFQKHFTEAASKVEGSGWAILVWVPRSGRLEILQ
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHH
STLHQLFTQWDTIPLLVLDVWEHAYYLQYQNRKDEYIKNWWNVVNWPDVEKRFETAKQIE
HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCC
WTPY
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]