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The map label for this gene is ribD1 [H]

Identifier: 218232159

GI number: 218232159

Start: 3277184

End: 3278287

Strand: Reverse

Name: ribD1 [H]

Synonym: BCB4264_A3397

Alternate gene names: 218232159

Gene position: 3278287-3277184 (Counterclockwise)

Preceding gene: 218232489

Following gene: 218234249

Centisome position: 60.5

GC content: 37.05

Gene sequence:

>1104_bases
ATGCTTGAGCATGAATTGTATATGAAGCTAGCACTAGAAAATGCCAAGGCTATGAAGGGACAAACGACTCCAAATCCATT
GGTTGGATCTGTAATTGTAAATGATAATCGAATTGTAGGGGTCGGAGCACATATGAAGGCCGGAGAATCACATGCCGAAA
TACATGCGATACGTATGGCTGGAGAACAGGCACGTGGTGGTACAATTTATGTAACTCTTGAACCTTGTTCTCATCATGGT
AGAACAGGGCCTTGTGCTGAAGCAATTGTACAAGCAGGAATTAAGAAGGTAGTAGTTGCTACACTTGATCCAAACCCGCT
TGTTTCTGGACGTGGAATTAAAATTCTACAAGATGCAGGTATTGAAGTACTTGTAGGAGTGTGTGAAGAAGAATCTAAAA
AAATGAATGAAGTCTTTAATAAATATATTTTGACAAAGCGCCCATTTGTAACGATTAAATCAGGAGTTACATTAGATGGG
AAAATCGCTACGTCTTTATCGGATAGTAAGTGGATTACATCTACAGAAGCAAGACAAGAAGTACACCAAATACGAAACGA
AAATGCGGCTATTTTAGTAGGAGCGAATACTGTTCAAAAGGATAATCCATCATTGACAACGCGTATTCCAAATGGCCGAA
ATCCAATTCGAGTAATATTGGACTCGACATTACGCATACCGATGGAAGCTAACGTTGTTACAGATAGAGAAGCTCCTACC
TGGATATTTACAACAAGTAATCATGCAGAGGAAAAAAAGAAAGCATTAGAAAATGCAGGAGTTAAAGTATTTGTTACTAG
CGGAGAAAAGCATATAAACTTACATGAAATGCTTGATGTTTTAGGACAAAAAGGAGTTTCCTCCCTGCTTATTGAAGGTG
GTGGAGAAGTAAATGCTTCGTTTATTGAAAATAAACTAATGGATAAAATTATTTTATATTTCGCACCTAAAATTATTGGA
GGTAGATTGGCGCCTAGTTTTGTAGAGGGGACTGGTATTACTAAAATGAAAGATGCAATTGAATTTAAGGATATATCATT
TACCCAGATTGGAAAAGATTATAGATTTATTGGCTATCCAGCATATCGGAAAGATGAGAAATAA

Upstream 100 bases:

>100_bases
ACGAGTCGTGAACCGTTATGGGGTGATGTCTCAGAGTTTAATGAGAAATATTTGCAAACGAAGATTCAGCGTTCTGGACA
TTTTGAAGGGGGACACTTAC

Downstream 100 bases:

>100_bases
GGGGAATAAAAACTACTTATATGTTCCGATAAATGGATTGCAGAAAGGAGCGATGAAGAGTGAAGTTTGGATTTGATATC
GATGATACATTAATTGATTT

Product: riboflavin biosynthesis protein RibD

Products: NA

Alternate protein names: Diaminohydroxyphosphoribosylaminopyrimidine deaminase; DRAP deaminase; Riboflavin-specific deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase; HTP reductase [H]

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MLEHELYMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGESHAEIHAIRMAGEQARGGTIYVTLEPCSHHG
RTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEVFNKYILTKRPFVTIKSGVTLDG
KIATSLSDSKWITSTEARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRVILDSTLRIPMEANVVTDREAPT
WIFTTSNHAEEKKKALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFIENKLMDKIILYFAPKIIG
GRLAPSFVEGTGITKMKDAIEFKDISFTQIGKDYRFIGYPAYRKDEK

Sequences:

>Translated_367_residues
MLEHELYMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGESHAEIHAIRMAGEQARGGTIYVTLEPCSHHG
RTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEVFNKYILTKRPFVTIKSGVTLDG
KIATSLSDSKWITSTEARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRVILDSTLRIPMEANVVTDREAPT
WIFTTSNHAEEKKKALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFIENKLMDKIILYFAPKIIG
GRLAPSFVEGTGITKMKDAIEFKDISFTQIGKDYRFIGYPAYRKDEK
>Mature_367_residues
MLEHELYMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGESHAEIHAIRMAGEQARGGTIYVTLEPCSHHG
RTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEVFNKYILTKRPFVTIKSGVTLDG
KIATSLSDSKWITSTEARQEVHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRVILDSTLRIPMEANVVTDREAPT
WIFTTSNHAEEKKKALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFIENKLMDKIILYFAPKIIG
GRLAPSFVEGTGITKMKDAIEFKDISFTQIGKDYRFIGYPAYRKDEK

Specific function: Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate [H]

COG id: COG1985

COG function: function code H; Pyrimidine reductase, riboflavin biosynthesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the HTP reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786616, Length=365, Percent_Identity=38.0821917808219, Blast_Score=268, Evalue=4e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016192
- InterPro:   IPR002125
- InterPro:   IPR016193
- InterPro:   IPR004794
- InterPro:   IPR011549
- InterPro:   IPR002734 [H]

Pfam domain/function: PF00383 dCMP_cyt_deam_1; PF01872 RibD_C [H]

EC number: =3.5.4.26; =1.1.1.193 [H]

Molecular weight: Translated: 40094; Mature: 40094

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS00903 CYT_DCMP_DEAMINASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEHELYMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGESHAEIHAIRMA
CCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEECCCCCCCCCCCEEEEEEEC
GEQARGGTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAG
CCCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEEECCC
IEVLVGVCEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQE
CEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCEECCEEEECCCCCCCEECHHHHHH
VHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRVILDSTLRIPMEANVVTDREAPT
HHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCEEEEEECCEECCEECCEEECCCCCE
WIFTTSNHAEEKKKALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNAS
EEEECCCCHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHH
FIENKLMDKIILYFAPKIIGGRLAPSFVEGTGITKMKDAIEFKDISFTQIGKDYRFIGYP
HHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHCCCCCHHHCCCCCEEEECC
AYRKDEK
CCCCCCC
>Mature Secondary Structure
MLEHELYMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGESHAEIHAIRMA
CCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEECCCCCCCCCCCEEEEEEEC
GEQARGGTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAG
CCCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEEECCC
IEVLVGVCEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQE
CEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCEECCEEEECCCCCCCEECHHHHHH
VHQIRNENAAILVGANTVQKDNPSLTTRIPNGRNPIRVILDSTLRIPMEANVVTDREAPT
HHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCEEEEEECCEECCEECCEEECCCCCE
WIFTTSNHAEEKKKALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNAS
EEEECCCCHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHH
FIENKLMDKIILYFAPKIIGGRLAPSFVEGTGITKMKDAIEFKDISFTQIGKDYRFIGYP
HHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHCCCCCHHHCCCCCEEEECC
AYRKDEK
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7934829; 9384377; 2112225; 9068650 [H]