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The map label for this gene is yabD [H]

Identifier: 21674625

GI number: 21674625

Start: 1716113

End: 1716892

Strand: Direct

Name: yabD [H]

Synonym: CT1811

Alternate gene names: 21674625

Gene position: 1716113-1716892 (Clockwise)

Preceding gene: 21674624

Following gene: 21674626

Centisome position: 79.64

GC content: 62.18

Gene sequence:

>780_bases
ATGAACACCCCGGGTTTCTGCGACATCCACTGCCATCTCTCCTTTCCCGATTTCGACGATGACCGTGACCGGGTGATCGG
CGATCTCCGCGCGGCTGGCTTGCAGTGTGTCATCGATCCGGGCACCGGCGTCGAGACGAACCGCCGCTCCATCGAACTGG
CAAACGGGTATGACTTCATCTATTCGAATGTCGGCCTGCACCCTCACGAAACAAACGTACCACTCTCGCCAGAGCTGTTC
GACAAACTCGCTGGACAGGCTCGATCGGCAAAGGTGGTTGGCATCGGCGAGATCGGCCTCGATTACCACTGGCCCGATCA
CGATCCGGCGCATCAGCAGGCGGCGTTCCGCGAGATGCTGCGCATAGCGGTCGACCTCGACCTGCCGGTGGTGATCCACT
GCCGCGACGCCTGGCCCGACATGCTGCGCATCCTCTCGGAGGAGCGCTCGTCGGCCCTGCGCGGCGCGATGCACTGCTTT
TCAGGAGATCTCGACATGGCCTGCCGCTGCATCAGCCTCGGGCTGAAAATTTCGATTCCCGGCACCATCACCTACAAAAA
GTCGCTGCTTCCGGAAGTGGCGGCCTCCGTCGGCCTCGGCGACCTGCTCTCCGAAACCGACGCGCCCTACCTTGCGCCAG
TACCCAAACGCGGCAAACGCAACGAACCGGCCTTCGTCGTCCACACGGTGCGCAAGATCGCCGATCACCGCCAGGAACCG
TTCGAAGAGGTAACGGAAGCGCTCGTGAGCAATGCAAGAACCCTGTTCGGCCTGCCGTAA

Upstream 100 bases:

>100_bases
TCGATCTGTGGCCGATTTTCAACGTCGCCGACTCCTGCATCACCATCGGCGCGTGCATGATCGTGCTGTTTCACGAAAAA
ATTTTCACCAGGAAACACGC

Downstream 100 bases:

>100_bases
CCGGCGGCTGCCGCTGATTTTGAAATTCATGCGAACTTGCGTAGGTTGAGCCTCGGACTGACCGCCATCAGTGACGCGGA
ACGACTCAGGCGATCTCATT

Product: Sec-independent protein translocase protein TatD, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MNTPGFCDIHCHLSFPDFDDDRDRVIGDLRAAGLQCVIDPGTGVETNRRSIELANGYDFIYSNVGLHPHETNVPLSPELF
DKLAGQARSAKVVGIGEIGLDYHWPDHDPAHQQAAFREMLRIAVDLDLPVVIHCRDAWPDMLRILSEERSSALRGAMHCF
SGDLDMACRCISLGLKISIPGTITYKKSLLPEVAASVGLGDLLSETDAPYLAPVPKRGKRNEPAFVVHTVRKIADHRQEP
FEEVTEALVSNARTLFGLP

Sequences:

>Translated_259_residues
MNTPGFCDIHCHLSFPDFDDDRDRVIGDLRAAGLQCVIDPGTGVETNRRSIELANGYDFIYSNVGLHPHETNVPLSPELF
DKLAGQARSAKVVGIGEIGLDYHWPDHDPAHQQAAFREMLRIAVDLDLPVVIHCRDAWPDMLRILSEERSSALRGAMHCF
SGDLDMACRCISLGLKISIPGTITYKKSLLPEVAASVGLGDLLSETDAPYLAPVPKRGKRNEPAFVVHTVRKIADHRQEP
FEEVTEALVSNARTLFGLP
>Mature_259_residues
MNTPGFCDIHCHLSFPDFDDDRDRVIGDLRAAGLQCVIDPGTGVETNRRSIELANGYDFIYSNVGLHPHETNVPLSPELF
DKLAGQARSAKVVGIGEIGLDYHWPDHDPAHQQAAFREMLRIAVDLDLPVVIHCRDAWPDMLRILSEERSSALRGAMHCF
SGDLDMACRCISLGLKISIPGTITYKKSLLPEVAASVGLGDLLSETDAPYLAPVPKRGKRNEPAFVVHTVRKIADHRQEP
FEEVTEALVSNARTLFGLP

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI225903424, Length=272, Percent_Identity=29.0441176470588, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI14042943, Length=297, Percent_Identity=26.2626262626263, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI226061853, Length=270, Percent_Identity=28.5185185185185, Blast_Score=85, Evalue=8e-17,
Organism=Homo sapiens, GI110349734, Length=264, Percent_Identity=28.7878787878788, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI110349730, Length=264, Percent_Identity=28.4090909090909, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI226061614, Length=253, Percent_Identity=27.2727272727273, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI225903439, Length=247, Percent_Identity=26.3157894736842, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI226061595, Length=227, Percent_Identity=27.7533039647577, Blast_Score=70, Evalue=2e-12,
Organism=Escherichia coli, GI87082439, Length=257, Percent_Identity=36.9649805447471, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI1787342, Length=255, Percent_Identity=34.1176470588235, Blast_Score=140, Evalue=9e-35,
Organism=Escherichia coli, GI48994985, Length=263, Percent_Identity=34.2205323193916, Blast_Score=135, Evalue=2e-33,
Organism=Caenorhabditis elegans, GI17559024, Length=282, Percent_Identity=26.241134751773, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17565396, Length=222, Percent_Identity=29.7297297297297, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71980746, Length=261, Percent_Identity=25.6704980842912, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17543026, Length=219, Percent_Identity=26.4840182648402, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24648690, Length=286, Percent_Identity=29.7202797202797, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI221330018, Length=260, Percent_Identity=28.8461538461538, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24586117, Length=260, Percent_Identity=28.8461538461538, Blast_Score=79, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 28560; Mature: 28560

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTPGFCDIHCHLSFPDFDDDRDRVIGDLRAAGLQCVIDPGTGVETNRRSIELANGYDFI
CCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEECCCCEEH
YSNVGLHPHETNVPLSPELFDKLAGQARSAKVVGIGEIGLDYHWPDHDPAHQQAAFREML
HHCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
RIAVDLDLPVVIHCRDAWPDMLRILSEERSSALRGAMHCFSGDLDMACRCISLGLKISIP
HHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEECC
GTITYKKSLLPEVAASVGLGDLLSETDAPYLAPVPKRGKRNEPAFVVHTVRKIADHRQEP
CEEEHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCH
FEEVTEALVSNARTLFGLP
HHHHHHHHHHCCHHHCCCC
>Mature Secondary Structure
MNTPGFCDIHCHLSFPDFDDDRDRVIGDLRAAGLQCVIDPGTGVETNRRSIELANGYDFI
CCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEECCCCEEH
YSNVGLHPHETNVPLSPELFDKLAGQARSAKVVGIGEIGLDYHWPDHDPAHQQAAFREML
HHCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
RIAVDLDLPVVIHCRDAWPDMLRILSEERSSALRGAMHCFSGDLDMACRCISLGLKISIP
HHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEECC
GTITYKKSLLPEVAASVGLGDLLSETDAPYLAPVPKRGKRNEPAFVVHTVRKIADHRQEP
CEEEHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCH
FEEVTEALVSNARTLFGLP
HHHHHHHHHHCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]