| Definition | Chlorobium tepidum TLS, complete genome. |
|---|---|
| Accession | NC_002932 |
| Length | 2,154,946 |
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The map label for this gene is hypF [H]
Identifier: 21674611
GI number: 21674611
Start: 1700675
End: 1702999
Strand: Reverse
Name: hypF [H]
Synonym: CT1797
Alternate gene names: 21674611
Gene position: 1702999-1700675 (Counterclockwise)
Preceding gene: 21674612
Following gene: 21674610
Centisome position: 79.03
GC content: 64.9
Gene sequence:
>2325_bases ATGGCTGAAAACGAAGCTCGCGGCGCTCTGAGCGGTTTGTCTCAACGTGAGCGCCGCCGGATCGAGGTTCGCGGCATCGT GCAGGGGGTGGGCTTCCGTCCCTTCGTCTGGCGGCTTGCTCATCAGCTCGATCTGGCTGGATTTGTCCGCAATGCAAGTT CCGGCGTGGTGATCGAGGTCGAGGGCAAGCCGGACGCACTCGACCGCTTCGAGACCGCCCTGCGCAGCGAAGCTCCGCCT TTGGCCCGCATCGATTCGATTGATCGCCACAGTATCCCCCCGTCCGTCTGCGGTGAACCGGGATTCATCATCCCGGAATC CTCCGGCGGCGAAGCGATGCAGACGCTCATTTCGCCCGACATCGCCACCTGCCCGGCCTGCCTTGCCGACATCGCTGACC CCGCCGGGCGGCGCTACCGTTACGCCTTCACCAACTGCACCGACTGCGGTCCGCGCTACACCATCGTCGAGCGCATTCCC TACGACCGCCCCTTTACTACGATGAAGCGCTTCGAGCTTTGTCCCGACTGCCAAAGAGAGTACAATGACCCCGGCGACCG CCGCTTCCACGCCCAACCCAATGCCTGCCCGGCGTGCGGCCCAAAGCTCGAACTGTGCGATGCGGTGGGCGTCCGGCTGG CGGTTGGCGACGAGATTACGGCGGCGGGCGAGCTTTTGGCGGGCGGGAAGATTCTGGCAATCAAGGGGATCGGCGGCTTT CATCTCGCCGTCGATGCCTCGAACGAGGCGGCTGTCCGGCGTCTCCGAAGCCGCAAGGGGCGCGAGGAAAAGCCGTTTGC CGTGATGGTGCGCGACCTCGCCGCCGCTCGCGCGCTGTGCGACATCAGCCCGGAAGAGAAGGCCGCGCTCGCCTCGCCGC AAGCGCCCATTGTGCTGCTGCGCGCGCGTCAAGGTTTGTCGCTCGCCCCGTCCATCGCGCCCGGCAACGACCGGCTCGGC GTGATGCTGCCCTACTCGCCGCTGCACTGGCTGCTCTTGCGGGAAGGTCCGAAGGTACTCGTGATGACCAGCGCGAACTT CAGCGAGGAGCCGCTCGTCGCCGATAACGCCGAGGCGCTTGAACGGCTGGCTGGCATCGCCGATGCGTTCTTGATGCACG ACCGGCCAATCGCCCGGCGCTGCGACGACTCGGTGGTGATGTCGATGGCCGGAGCGGTGCGCCTGATTCGCCGCAGCCGT GGCTACGCGCCCGCACCGGTCAGGCTCGCCGAGAGCGGTCCGCCGGTGCTCGGCACGGGGGGCGAGCTGAAGAGCGCGCT CTGCCTCGTGAAGGGCGGCGAAGCGTTCATGAGTCAGCATATCGGCGACATGAAAAACTACGAAGCGTACCGCCACTTTG ACGACGTAGCCGCGCACCTGCAACGCATTTTTCAGACGGAAGCCGAGCTGCTGGTGCACGACCAGCACCCCGCCTACATG ACCACGCGCTGGGCGCTGGAGCAGGGTAAACCGACGCTTGGCGTGCAGCACCACCATGCGCACCTCGCTTCGTGTCTTGC CGAGCACCAGCACAGCGGCCCCGCCATCGGTCTCACGCTCGACGGCGCTGGCTACGGCACGGACGGCACGGTGTGGGGCG GCGAAGTGCTGATTGGCGACGCCGCCAGAGCGATGCGCTTCGCCTCGCTGGAACCGATGCCCCTGCCCGGCGGCGACGTG GCTGTGCGGCAAGTCTGGCGAACAGCCCTCGGCTGGCTCCACCGCAGCGGCGTGTCGCCAGAGGGCCTTGAGTGCTTCCG GCAGCCGCAGTCGGCGCAGGTGCTTGAACTGCTTCGCAAAGAAGTTGGCACTTCGGAAAGCTCAAGCTGCGGGCGCCTTT TCGACGCCGTCGCCTCGATCTGCGGATTGCGGCACGAAGCCCGCTACGAAGGCCAGGCCGCCATCGAGCTGATGCAGGCG GCAGGCGGCCGAATCGCTGAAGCAGGCTACCGTTTCGGCTTCGAGCGGAAGCCTAACCGGTGGCTGATGCTCATTTCGCC CATGCTCCGCGACATCGCTGCCGCCGTCCGCGCTGGCGCGAGCTCCACGGAGATTTCTCGCCACTTTCACCGAACACTGG TTGGTATTTTTTCAGAAATTACGCGCATGGCCTATCTTGAAACCGGTCTCAAAACTGTTGTGTTAAGCGGTGGCGTATTC CAGAACCAGCTTCTGACTGAAACGCTTGCTCGCGAACTCGAAAGCAACGGCTACCAAGTGCTGATGCACGCACAAGTGCC AACCAGCGATGGCGGCATAAGCTTGGGGCAGGCGGTTATTGGGCGGGAGTTTTTGCGCGGTAGCTACCGAGGAGTTGATA ATTGA
Upstream 100 bases:
>100_bases ACGTGGCCAAATGCCGCGAGTACGCCATGCAGGTCAATCACCATCTCGAATGGATCGAGGTTTCTGCCAAGACCGGCGAG GGCTTCGACCAGTGGATTGC
Downstream 100 bases:
>100_bases TAGTTGACAGTTGACAGTTGACAGTTGATAGTTAAAAAGATGAAGAGCGTGAAGCAGAAAGCCGAGATAAATGGGAACGG AGTGAAGGAGCTTTCATTTG
Product: hydrogenase maturation protein HypF
Products: NA
Alternate protein names: Carbamoyl phosphate-converting enzyme hypF2; [NiFe]-hydrogenase maturation factor hypF2; Hydrogenase maturation protein hypF2 [H]
Number of amino acids: Translated: 774; Mature: 773
Protein sequence:
>774_residues MAENEARGALSGLSQRERRRIEVRGIVQGVGFRPFVWRLAHQLDLAGFVRNASSGVVIEVEGKPDALDRFETALRSEAPP LARIDSIDRHSIPPSVCGEPGFIIPESSGGEAMQTLISPDIATCPACLADIADPAGRRYRYAFTNCTDCGPRYTIVERIP YDRPFTTMKRFELCPDCQREYNDPGDRRFHAQPNACPACGPKLELCDAVGVRLAVGDEITAAGELLAGGKILAIKGIGGF HLAVDASNEAAVRRLRSRKGREEKPFAVMVRDLAAARALCDISPEEKAALASPQAPIVLLRARQGLSLAPSIAPGNDRLG VMLPYSPLHWLLLREGPKVLVMTSANFSEEPLVADNAEALERLAGIADAFLMHDRPIARRCDDSVVMSMAGAVRLIRRSR GYAPAPVRLAESGPPVLGTGGELKSALCLVKGGEAFMSQHIGDMKNYEAYRHFDDVAAHLQRIFQTEAELLVHDQHPAYM TTRWALEQGKPTLGVQHHHAHLASCLAEHQHSGPAIGLTLDGAGYGTDGTVWGGEVLIGDAARAMRFASLEPMPLPGGDV AVRQVWRTALGWLHRSGVSPEGLECFRQPQSAQVLELLRKEVGTSESSSCGRLFDAVASICGLRHEARYEGQAAIELMQA AGGRIAEAGYRFGFERKPNRWLMLISPMLRDIAAAVRAGASSTEISRHFHRTLVGIFSEITRMAYLETGLKTVVLSGGVF QNQLLTETLARELESNGYQVLMHAQVPTSDGGISLGQAVIGREFLRGSYRGVDN
Sequences:
>Translated_774_residues MAENEARGALSGLSQRERRRIEVRGIVQGVGFRPFVWRLAHQLDLAGFVRNASSGVVIEVEGKPDALDRFETALRSEAPP LARIDSIDRHSIPPSVCGEPGFIIPESSGGEAMQTLISPDIATCPACLADIADPAGRRYRYAFTNCTDCGPRYTIVERIP YDRPFTTMKRFELCPDCQREYNDPGDRRFHAQPNACPACGPKLELCDAVGVRLAVGDEITAAGELLAGGKILAIKGIGGF HLAVDASNEAAVRRLRSRKGREEKPFAVMVRDLAAARALCDISPEEKAALASPQAPIVLLRARQGLSLAPSIAPGNDRLG VMLPYSPLHWLLLREGPKVLVMTSANFSEEPLVADNAEALERLAGIADAFLMHDRPIARRCDDSVVMSMAGAVRLIRRSR GYAPAPVRLAESGPPVLGTGGELKSALCLVKGGEAFMSQHIGDMKNYEAYRHFDDVAAHLQRIFQTEAELLVHDQHPAYM TTRWALEQGKPTLGVQHHHAHLASCLAEHQHSGPAIGLTLDGAGYGTDGTVWGGEVLIGDAARAMRFASLEPMPLPGGDV AVRQVWRTALGWLHRSGVSPEGLECFRQPQSAQVLELLRKEVGTSESSSCGRLFDAVASICGLRHEARYEGQAAIELMQA AGGRIAEAGYRFGFERKPNRWLMLISPMLRDIAAAVRAGASSTEISRHFHRTLVGIFSEITRMAYLETGLKTVVLSGGVF QNQLLTETLARELESNGYQVLMHAQVPTSDGGISLGQAVIGREFLRGSYRGVDN >Mature_773_residues AENEARGALSGLSQRERRRIEVRGIVQGVGFRPFVWRLAHQLDLAGFVRNASSGVVIEVEGKPDALDRFETALRSEAPPL ARIDSIDRHSIPPSVCGEPGFIIPESSGGEAMQTLISPDIATCPACLADIADPAGRRYRYAFTNCTDCGPRYTIVERIPY DRPFTTMKRFELCPDCQREYNDPGDRRFHAQPNACPACGPKLELCDAVGVRLAVGDEITAAGELLAGGKILAIKGIGGFH LAVDASNEAAVRRLRSRKGREEKPFAVMVRDLAAARALCDISPEEKAALASPQAPIVLLRARQGLSLAPSIAPGNDRLGV MLPYSPLHWLLLREGPKVLVMTSANFSEEPLVADNAEALERLAGIADAFLMHDRPIARRCDDSVVMSMAGAVRLIRRSRG YAPAPVRLAESGPPVLGTGGELKSALCLVKGGEAFMSQHIGDMKNYEAYRHFDDVAAHLQRIFQTEAELLVHDQHPAYMT TRWALEQGKPTLGVQHHHAHLASCLAEHQHSGPAIGLTLDGAGYGTDGTVWGGEVLIGDAARAMRFASLEPMPLPGGDVA VRQVWRTALGWLHRSGVSPEGLECFRQPQSAQVLELLRKEVGTSESSSCGRLFDAVASICGLRHEARYEGQAAIELMQAA GGRIAEAGYRFGFERKPNRWLMLISPMLRDIAAAVRAGASSTEISRHFHRTLVGIFSEITRMAYLETGLKTVVLSGGVFQ NQLLTETLARELESNGYQVLMHAQVPTSDGGISLGQAVIGREFLRGSYRGVDN
Specific function: Along with hypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carb
COG id: COG0068
COG function: function code O; Hydrogenase maturation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 YrdC-like domain [H]
Homologues:
Organism=Escherichia coli, GI2367152, Length=763, Percent_Identity=42.7260812581913, Blast_Score=481, Evalue=1e-137,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001792 - InterPro: IPR017968 - InterPro: IPR004421 - InterPro: IPR017945 - InterPro: IPR006070 - InterPro: IPR011125 [H]
Pfam domain/function: PF00708 Acylphosphatase; PF01300 Sua5_yciO_yrdC; PF07503 zf-HYPF [H]
EC number: NA
Molecular weight: Translated: 83958; Mature: 83827
Theoretical pI: Translated: 7.08; Mature: 7.08
Prosite motif: PS00150 ACYLPHOSPHATASE_1 ; PS51160 ACYLPHOSPHATASE_3 ; PS00216 SUGAR_TRANSPORT_1 ; PS51163 YRDC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAENEARGALSGLSQRERRRIEVRGIVQGVGFRPFVWRLAHQLDLAGFVRNASSGVVIEV CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE EGKPDALDRFETALRSEAPPLARIDSIDRHSIPPSVCGEPGFIIPESSGGEAMQTLISPD CCCCCHHHHHHHHHHCCCCCCHHHCCCCCCCCCHHHCCCCCEEEECCCCCHHHHHHHCCC IATCPACLADIADPAGRRYRYAFTNCTDCGPRYTIVERIPYDRPFTTMKRFELCPDCQRE HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCHHHHH YNDPGDRRFHAQPNACPACGPKLELCDAVGVRLAVGDEITAAGELLAGGKILAIKGIGGF CCCCCCCEECCCCCCCCCCCCCHHHHHHCCCEEEECCCHHHHHHHHCCCEEEEEECCCCE HLAVDASNEAAVRRLRSRKGREEKPFAVMVRDLAAARALCDISPEEKAALASPQAPIVLL EEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEEE RARQGLSLAPSIAPGNDRLGVMLPYSPLHWLLLREGPKVLVMTSANFSEEPLVADNAEAL EECCCCCCCCCCCCCCCCEEEEECCCHHEEEEEECCCCEEEEECCCCCCCCCCCCCHHHH ERLAGIADAFLMHDRPIARRCDDSVVMSMAGAVRLIRRSRGYAPAPVRLAESGPPVLGTG HHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCEEECC GELKSALCLVKGGEAFMSQHIGDMKNYEAYRHFDDVAAHLQRIFQTEAELLVHDQHPAYM HHHHHHEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEE TTRWALEQGKPTLGVQHHHAHLASCLAEHQHSGPAIGLTLDGAGYGTDGTVWGGEVLIGD EEHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCEEEECC AARAMRFASLEPMPLPGGDVAVRQVWRTALGWLHRSGVSPEGLECFRQPQSAQVLELLRK HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHH EVGTSESSSCGRLFDAVASICGLRHEARYEGQAAIELMQAAGGRIAEAGYRFGFERKPNR HHCCCCCCHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHCCCCEEHHHHHCCCCCCCCC WLMLISPMLRDIAAAVRAGASSTEISRHFHRTLVGIFSEITRMAYLETGLKTVVLSGGVF EEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHH QNQLLTETLARELESNGYQVLMHAQVPTSDGGISLGQAVIGREFLRGSYRGVDN HHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure AENEARGALSGLSQRERRRIEVRGIVQGVGFRPFVWRLAHQLDLAGFVRNASSGVVIEV CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE EGKPDALDRFETALRSEAPPLARIDSIDRHSIPPSVCGEPGFIIPESSGGEAMQTLISPD CCCCCHHHHHHHHHHCCCCCCHHHCCCCCCCCCHHHCCCCCEEEECCCCCHHHHHHHCCC IATCPACLADIADPAGRRYRYAFTNCTDCGPRYTIVERIPYDRPFTTMKRFELCPDCQRE HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCHHHHH YNDPGDRRFHAQPNACPACGPKLELCDAVGVRLAVGDEITAAGELLAGGKILAIKGIGGF CCCCCCCEECCCCCCCCCCCCCHHHHHHCCCEEEECCCHHHHHHHHCCCEEEEEECCCCE HLAVDASNEAAVRRLRSRKGREEKPFAVMVRDLAAARALCDISPEEKAALASPQAPIVLL EEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEEE RARQGLSLAPSIAPGNDRLGVMLPYSPLHWLLLREGPKVLVMTSANFSEEPLVADNAEAL EECCCCCCCCCCCCCCCCEEEEECCCHHEEEEEECCCCEEEEECCCCCCCCCCCCCHHHH ERLAGIADAFLMHDRPIARRCDDSVVMSMAGAVRLIRRSRGYAPAPVRLAESGPPVLGTG HHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCEEECC GELKSALCLVKGGEAFMSQHIGDMKNYEAYRHFDDVAAHLQRIFQTEAELLVHDQHPAYM HHHHHHEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEE TTRWALEQGKPTLGVQHHHAHLASCLAEHQHSGPAIGLTLDGAGYGTDGTVWGGEVLIGD EEHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCEEEECC AARAMRFASLEPMPLPGGDVAVRQVWRTALGWLHRSGVSPEGLECFRQPQSAQVLELLRK HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHH EVGTSESSSCGRLFDAVASICGLRHEARYEGQAAIELMQAAGGRIAEAGYRFGFERKPNR HHCCCCCCHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHCCCCEEHHHHHCCCCCCCCC WLMLISPMLRDIAAAVRAGASSTEISRHFHRTLVGIFSEITRMAYLETGLKTVVLSGGVF EEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHH QNQLLTETLARELESNGYQVLMHAQVPTSDGGISLGQAVIGREFLRGSYRGVDN HHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9799289; 12948488 [H]