| Definition | Chlorobium tepidum TLS, complete genome. |
|---|---|
| Accession | NC_002932 |
| Length | 2,154,946 |
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The map label for this gene is ypjG [H]
Identifier: 21674240
GI number: 21674240
Start: 1329752
End: 1330504
Strand: Direct
Name: ypjG [H]
Synonym: CT1419
Alternate gene names: 21674240
Gene position: 1329752-1330504 (Clockwise)
Preceding gene: 21674238
Following gene: 21674241
Centisome position: 61.71
GC content: 61.49
Gene sequence:
>753_bases ATGACCTTGACTGCACCCATCCAACCGGTTTACGCACTCGCTTTCGGCGCTCATCCCGACGATGTCGAACTCGCCTGTGG AGCGACGCTCCTGAAAATCATGGACGAGGGAAAGCCGGTGGCCGTCTGCGACCTCACCGCTGGGGAGATGGGCACGCTCG GCACCGCCGAAACCCGCCGTCAGGAGGCCGCGCTGGCCACCGAGCGCATGGGTTACGTGGCGCGAGAGCAGCTCGATCTC GGCGATTCGGAGCTGTTCTATACTAAAGAGAGCCTGCACAAGATCATCCGGATCATCCGCAAATACCGGCCCGACACGGT TTTCTGCAACCCGCCGGACGAACGCCATCCCGACCACATGAAAGCCTCGCGCCTCATCTACGAGGCCTGCTACTACGCCG GGCTGCGCAAAATCGAAACCTTTGATGGTGGCCTGCCACAAGCCGCACACCGTCCGCGCCACCTGCTCTATTACATCCAG TTCAAGCAGCTCGAACCGCAGATCGTCGTGGACGTTTCATCGACCTTCGAGCGTTCGCGAGCCGGTATAGAAGCGTTCGG AACGCAATTCCACCGCAAGGAGAACAGCGACGAGCCAGTCACGATGATCAACCGAAAGGAGTTCCTGCCGGGCCTCGAAG CGCGCTCGAGGGCACTCGGCGAGCAGATCGGCGTCATGTACGGCGAGGGGTTCCGCCTGCCGACGGCACTCGGCATCGAT CACTTCACGAGCGTTTTTCCGCCCGGCGTTTGA
Upstream 100 bases:
>100_bases TTGATTGAGTCGAACTATTTTTACCTTGATCATCGAGTGTATCTTTTTTTACCTGATAGCCTTCGTGGGCTGAAAACCGC GTCGCTTAATATATAAAATC
Downstream 100 bases:
>100_bases CGGCGGGCCAACCCATCAATAGAATTTCAGACCTGACCGCCATGCACAAATCATTGCTGAGCATCGCCGCTCTTTTGCTA GTGACGCTGTTCGCGGGCTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 250; Mature: 249
Protein sequence:
>250_residues MTLTAPIQPVYALAFGAHPDDVELACGATLLKIMDEGKPVAVCDLTAGEMGTLGTAETRRQEAALATERMGYVAREQLDL GDSELFYTKESLHKIIRIIRKYRPDTVFCNPPDERHPDHMKASRLIYEACYYAGLRKIETFDGGLPQAAHRPRHLLYYIQ FKQLEPQIVVDVSSTFERSRAGIEAFGTQFHRKENSDEPVTMINRKEFLPGLEARSRALGEQIGVMYGEGFRLPTALGID HFTSVFPPGV
Sequences:
>Translated_250_residues MTLTAPIQPVYALAFGAHPDDVELACGATLLKIMDEGKPVAVCDLTAGEMGTLGTAETRRQEAALATERMGYVAREQLDL GDSELFYTKESLHKIIRIIRKYRPDTVFCNPPDERHPDHMKASRLIYEACYYAGLRKIETFDGGLPQAAHRPRHLLYYIQ FKQLEPQIVVDVSSTFERSRAGIEAFGTQFHRKENSDEPVTMINRKEFLPGLEARSRALGEQIGVMYGEGFRLPTALGID HFTSVFPPGV >Mature_249_residues TLTAPIQPVYALAFGAHPDDVELACGATLLKIMDEGKPVAVCDLTAGEMGTLGTAETRRQEAALATERMGYVAREQLDLG DSELFYTKESLHKIIRIIRKYRPDTVFCNPPDERHPDHMKASRLIYEACYYAGLRKIETFDGGLPQAAHRPRHLLYYIQF KQLEPQIVVDVSSTFERSRAGIEAFGTQFHRKENSDEPVTMINRKEFLPGLEARSRALGEQIGVMYGEGFRLPTALGIDH FTSVFPPGV
Specific function: Unknown
COG id: COG2120
COG function: function code S; Uncharacterized proteins, LmbE homologs
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PIGL family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003737 [H]
Pfam domain/function: PF02585 PIG-L [H]
EC number: NA
Molecular weight: Translated: 28003; Mature: 27872
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLTAPIQPVYALAFGAHPDDVELACGATLLKIMDEGKPVAVCDLTAGEMGTLGTAETRR CCCCCCCCHHHHHEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHH QEAALATERMGYVAREQLDLGDSELFYTKESLHKIIRIIRKYRPDTVFCNPPDERHPDHM HHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHH KASRLIYEACYYAGLRKIETFDGGLPQAAHRPRHLLYYIQFKQLEPQIVVDVSSTFERSR HHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCEEEEEEEEECCCCEEEEECHHHHHHHH AGIEAFGTQFHRKENSDEPVTMINRKEFLPGLEARSRALGEQIGVMYGEGFRLPTALGID CCHHHHHHHHHHCCCCCCCEEEECHHHHCCCHHHHHHHHHHHHHHEECCCCCCCHHHCHH HFTSVFPPGV HHHHHCCCCC >Mature Secondary Structure TLTAPIQPVYALAFGAHPDDVELACGATLLKIMDEGKPVAVCDLTAGEMGTLGTAETRR CCCCCCCHHHHHEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHH QEAALATERMGYVAREQLDLGDSELFYTKESLHKIIRIIRKYRPDTVFCNPPDERHPDHM HHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHH KASRLIYEACYYAGLRKIETFDGGLPQAAHRPRHLLYYIQFKQLEPQIVVDVSSTFERSR HHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCEEEEEEEEECCCCEEEEECHHHHHHHH AGIEAFGTQFHRKENSDEPVTMINRKEFLPGLEARSRALGEQIGVMYGEGFRLPTALGID CCHHHHHHHHHHCCCCCCCEEEECHHHHCCCHHHHHHHHHHHHHHEECCCCCCCHHHCHH HFTSVFPPGV HHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8760912; 9384377 [H]