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The map label for this gene is pds [H]

Identifier: 21674235

GI number: 21674235

Start: 1325491

End: 1326852

Strand: Direct

Name: pds [H]

Synonym: CT1414

Alternate gene names: 21674235

Gene position: 1325491-1326852 (Clockwise)

Preceding gene: 21674234

Following gene: 21674236

Centisome position: 61.51

GC content: 59.4

Gene sequence:

>1362_bases
TTGAAAGTAGCCATATTCGGAGCCGGTGTCGCCGGTCTCAGCGCGGCCATCGAACTGGTCGATCGCGGCCATACCGTCGA
ACTGTATGAAAAACGCAAGGTTCTCGGCGGAAAAGTTTCGGTCTGGAAAGACAGTGACGGCGACTCGATCGAGTCCGGAC
TGCATATCGTCTTCGGCGGTTACACTCAGCTTCAGAAGTATCTGGACAAGATCGGCGCGGGCGATAACTATCTCTGGAAG
GATCATTCGCTGATCTATGCCGAGTCGGACGGCAAGCAGTCATTCTTCAAAAAGGCCAACCTGCCAAGCCCGTGGGCGGA
GGTGGTCGGCGGCTTGCAGGCGGACTTCCTCACCATGTGGGACAAGATTTCGCTTATCAAAGGGCTTTGGCCCGCGCTGG
CTGGCAACGAGGAGTACTTCCGCAGCCAGGACCACATGACCTACTCCGAGTGGCACCGCCTGCACGGCGCTTCGGAGCAC
TCGCTGCAGAAGCTCTGGCGGGCGATCGCTCTGGCGATGAACTTCATCGAGCCGAATGTCATCAGCGCCCGCCCGATGAT
CACCATCTTCAAATACTTCGGCACCGACTACGCCGCCACCAAGTTCGCCTTCTTCCGTAAAAATCCCGGCGACTCGATGA
TCGAGCCGATGCGCCAGTACATCCAGAGCAAGGGTGGCCGCATCTTCATCGATGCTCGCCTGTCGCGCTTCGAGCTGAAC
GACGACAAGACCATCAAGCGCGCCGTGCTGCGTGACGGCCACACCGTCGAGGCCGACGCCTACATTTCCGCATTGCCGGT
GCACAGCGTCAAGAAGATCGTGCCGAACGAATGGCTGGAGCACGACTACTTTCTGAACCTGCACCAGTTTGTCGGCAGCC
CGGTGGCCAACTGCCAGCTCTGGTTCGACAAGAAAATCACCGATACCGACAACCTGATGTTCTCGCAGGGCACCACCTTC
GCCACCTTCGCCGACGTCTCGATCACCTGCCCGGACGATTTCCAGGCGGGCATGGGCACGGCCTGCGGCGGCAGCGTGAT
GAGCCTCGTGCTCGCGCCTGCCCACCAGTTGCTCGACCTGCCGAACGAGGTGATCACGGAGATGGTGATGAAGGAGATTC
ACGACCGCTTCCCAAAATCGCGCGATGCGAAGCTGCTTAAATCGACCATCGTCAAGATTCCGCAGTCGGTCTATAAAGCG
GTGCCGGACGTCGATCAGTACCGGCCCGACCAGGTCAGCCCGATCCGCAACTTCTTCCTCGCGGGTGACTACACCTATCA
GCACTACCTGGCCTCAATGGAGGGCGCAGCACTCAGTGGACGGCAGGTAGCCGAAAAACTGCACCAGAGGATGGGCCGCT
GA

Upstream 100 bases:

>100_bases
TGGCCCCTGGCAACTCCCGTCACCCTTTCGGGAAAACGTCTCAAACCTTATATTCTGCATTATTTTTGAGCATCTCCAAC
CTCAAGTCATCCAAGCAACA

Downstream 100 bases:

>100_bases
TCTGAGAGATTTCCGACAGGGCGGGCAGGTGTTTTACAACCACATTCTGTTGGGGCAGACCTGCGTGTCTGCCCTTCCCA
TGCGATGGTGTCGCGATGTG

Product: zeta-carotene desaturase

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 453; Mature: 453

Protein sequence:

>453_residues
MKVAIFGAGVAGLSAAIELVDRGHTVELYEKRKVLGGKVSVWKDSDGDSIESGLHIVFGGYTQLQKYLDKIGAGDNYLWK
DHSLIYAESDGKQSFFKKANLPSPWAEVVGGLQADFLTMWDKISLIKGLWPALAGNEEYFRSQDHMTYSEWHRLHGASEH
SLQKLWRAIALAMNFIEPNVISARPMITIFKYFGTDYAATKFAFFRKNPGDSMIEPMRQYIQSKGGRIFIDARLSRFELN
DDKTIKRAVLRDGHTVEADAYISALPVHSVKKIVPNEWLEHDYFLNLHQFVGSPVANCQLWFDKKITDTDNLMFSQGTTF
ATFADVSITCPDDFQAGMGTACGGSVMSLVLAPAHQLLDLPNEVITEMVMKEIHDRFPKSRDAKLLKSTIVKIPQSVYKA
VPDVDQYRPDQVSPIRNFFLAGDYTYQHYLASMEGAALSGRQVAEKLHQRMGR

Sequences:

>Translated_453_residues
MKVAIFGAGVAGLSAAIELVDRGHTVELYEKRKVLGGKVSVWKDSDGDSIESGLHIVFGGYTQLQKYLDKIGAGDNYLWK
DHSLIYAESDGKQSFFKKANLPSPWAEVVGGLQADFLTMWDKISLIKGLWPALAGNEEYFRSQDHMTYSEWHRLHGASEH
SLQKLWRAIALAMNFIEPNVISARPMITIFKYFGTDYAATKFAFFRKNPGDSMIEPMRQYIQSKGGRIFIDARLSRFELN
DDKTIKRAVLRDGHTVEADAYISALPVHSVKKIVPNEWLEHDYFLNLHQFVGSPVANCQLWFDKKITDTDNLMFSQGTTF
ATFADVSITCPDDFQAGMGTACGGSVMSLVLAPAHQLLDLPNEVITEMVMKEIHDRFPKSRDAKLLKSTIVKIPQSVYKA
VPDVDQYRPDQVSPIRNFFLAGDYTYQHYLASMEGAALSGRQVAEKLHQRMGR
>Mature_453_residues
MKVAIFGAGVAGLSAAIELVDRGHTVELYEKRKVLGGKVSVWKDSDGDSIESGLHIVFGGYTQLQKYLDKIGAGDNYLWK
DHSLIYAESDGKQSFFKKANLPSPWAEVVGGLQADFLTMWDKISLIKGLWPALAGNEEYFRSQDHMTYSEWHRLHGASEH
SLQKLWRAIALAMNFIEPNVISARPMITIFKYFGTDYAATKFAFFRKNPGDSMIEPMRQYIQSKGGRIFIDARLSRFELN
DDKTIKRAVLRDGHTVEADAYISALPVHSVKKIVPNEWLEHDYFLNLHQFVGSPVANCQLWFDKKITDTDNLMFSQGTTF
ATFADVSITCPDDFQAGMGTACGGSVMSLVLAPAHQLLDLPNEVITEMVMKEIHDRFPKSRDAKLLKSTIVKIPQSVYKA
VPDVDQYRPDQVSPIRNFFLAGDYTYQHYLASMEGAALSGRQVAEKLHQRMGR

Specific function: This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene [H]

COG id: COG3349

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR014102 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: NA

Molecular weight: Translated: 50980; Mature: 50980

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVAIFGAGVAGLSAAIELVDRGHTVELYEKRKVLGGKVSVWKDSDGDSIESGLHIVFGG
CEEEEEECCHHHHHHHHHHHHCCCEEEHHHHHHHCCCEEEEEECCCCCHHHCCCEEEECC
YTQLQKYLDKIGAGDNYLWKDHSLIYAESDGKQSFFKKANLPSPWAEVVGGLQADFLTMW
HHHHHHHHHHHCCCCCEEECCCCEEEEECCCHHHHHHHCCCCCHHHHHHCCCHHHHHHHH
DKISLIKGLWPALAGNEEYFRSQDHMTYSEWHRLHGASEHSLQKLWRAIALAMNFIEPNV
HHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
ISARPMITIFKYFGTDYAATKFAFFRKNPGDSMIEPMRQYIQSKGGRIFIDARLSRFELN
CCCCHHHHHHHHHCCCHHHHHHHHEECCCCHHHHHHHHHHHHCCCCEEEEEEECEEEECC
DDKTIKRAVLRDGHTVEADAYISALPVHSVKKIVPNEWLEHDYFLNLHQFVGSPVANCQL
CCHHHHHHHHCCCCEEECCHHHHHCCHHHHHHHCCHHHHCHHHHEEHHHHHCCCCCCEEE
WFDKKITDTDNLMFSQGTTFATFADVSITCPDDFQAGMGTACGGSVMSLVLAPAHQLLDL
EECCCCCCCCCEEEECCCCEEEEECEEEECCCCHHCCCCCCCCHHHHHHHHHHHHHHHCC
PNEVITEMVMKEIHDRFPKSRDAKLLKSTIVKIPQSVYKAVPDVDQYRPDQVSPIRNFFL
CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHCCCHHHCCCCCCCHHHHHHC
AGDYTYQHYLASMEGAALSGRQVAEKLHQRMGR
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MKVAIFGAGVAGLSAAIELVDRGHTVELYEKRKVLGGKVSVWKDSDGDSIESGLHIVFGG
CEEEEEECCHHHHHHHHHHHHCCCEEEHHHHHHHCCCEEEEEECCCCCHHHCCCEEEECC
YTQLQKYLDKIGAGDNYLWKDHSLIYAESDGKQSFFKKANLPSPWAEVVGGLQADFLTMW
HHHHHHHHHHHCCCCCEEECCCCEEEEECCCHHHHHHHCCCCCHHHHHHCCCHHHHHHHH
DKISLIKGLWPALAGNEEYFRSQDHMTYSEWHRLHGASEHSLQKLWRAIALAMNFIEPNV
HHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
ISARPMITIFKYFGTDYAATKFAFFRKNPGDSMIEPMRQYIQSKGGRIFIDARLSRFELN
CCCCHHHHHHHHHCCCHHHHHHHHEECCCCHHHHHHHHHHHHCCCCEEEEEEECEEEECC
DDKTIKRAVLRDGHTVEADAYISALPVHSVKKIVPNEWLEHDYFLNLHQFVGSPVANCQL
CCHHHHHHHHCCCCEEECCHHHHHCCHHHHHHHCCHHHHCHHHHEEHHHHHCCCCCCEEE
WFDKKITDTDNLMFSQGTTFATFADVSITCPDDFQAGMGTACGGSVMSLVLAPAHQLLDL
EECCCCCCCCCEEEECCCCEEEEECEEEECCCCHHCCCCCCCCHHHHHHHHHHHHHHHCC
PNEVITEMVMKEIHDRFPKSRDAKLLKSTIVKIPQSVYKAVPDVDQYRPDQVSPIRNFFL
CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHCCCHHHCCCCCCCHHHHHHC
AGDYTYQHYLASMEGAALSGRQVAEKLHQRMGR
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1907510 [H]