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The map label for this gene is asnC [C]

Identifier: 21674233

GI number: 21674233

Start: 1324329

End: 1324853

Strand: Reverse

Name: asnC [C]

Synonym: CT1412

Alternate gene names: 21674233

Gene position: 1324853-1324329 (Counterclockwise)

Preceding gene: 21674239

Following gene: 21674232

Centisome position: 61.48

GC content: 52.57

Gene sequence:

>525_bases
ATGTCCGGACACCTTGACCTCATCGATCTGAAGATCATCGAATCTCTTGGCGGCAACGGCCGGATACGGTTGAGTGAGTT
GGCCGAGGTTGTCGGCCTGTCGATTCCATCGGTCAGCGAGCGGCTCGACAAATTGCAGAAGAACGGTATCATTAAGGGGT
TCACGATGGAGGTCGATGAGCGTCAGCTCGGGTTCGACATCCAGGCGTTTGTGCGTGTCCGCGTCGATTCCTCGAAGCAC
TACAAGTCGTTCGTGGAGCATGTCATGAAAGAAGAGGAGATCATGGAGTGCTACTCCGTAACCGGAGAGGGCTCGCATAT
CCTCAAGGTTATGACGCACAACACAGCTTCCCTTGAGCGGTTCCTGTCGCGCATCCAGAGCTGGCCGGGAGTATTGGGTA
CCAATACGAGTATCGTTCTTTCGCAGTTGAAAAAGAATAACCGGATCTGCGCCGAGATTGTTCGCAACAATCTGCAGGAC
CGGCAGGTGCTGATTACCTTCGATGAAAAGAAATCGAAAAAATAG

Upstream 100 bases:

>100_bases
AATATTAAGGGGAAATAATGGTTGATGCCCTCATAATTTAGAATAAGCTTGTTTATTTCTTAGATTTCATTAATTTACTA
CAAAACCGAAGATTCTGCTT

Downstream 100 bases:

>100_bases
CCAGCAGTCATTTCAGGTTTAATCAACCACGTTTAAAACAGTCCAAAACAAGTAAAGGAGGATCTCTTGAGTAACGAGAG
CAAAAAACCGGTGGCGTCCT

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MSGHLDLIDLKIIESLGGNGRIRLSELAEVVGLSIPSVSERLDKLQKNGIIKGFTMEVDERQLGFDIQAFVRVRVDSSKH
YKSFVEHVMKEEEIMECYSVTGEGSHILKVMTHNTASLERFLSRIQSWPGVLGTNTSIVLSQLKKNNRICAEIVRNNLQD
RQVLITFDEKKSKK

Sequences:

>Translated_174_residues
MSGHLDLIDLKIIESLGGNGRIRLSELAEVVGLSIPSVSERLDKLQKNGIIKGFTMEVDERQLGFDIQAFVRVRVDSSKH
YKSFVEHVMKEEEIMECYSVTGEGSHILKVMTHNTASLERFLSRIQSWPGVLGTNTSIVLSQLKKNNRICAEIVRNNLQD
RQVLITFDEKKSKK
>Mature_173_residues
SGHLDLIDLKIIESLGGNGRIRLSELAEVVGLSIPSVSERLDKLQKNGIIKGFTMEVDERQLGFDIQAFVRVRVDSSKHY
KSFVEHVMKEEEIMECYSVTGEGSHILKVMTHNTASLERFLSRIQSWPGVLGTNTSIVLSQLKKNNRICAEIVRNNLQDR
QVLITFDEKKSKK

Specific function: Activator Of Asna Transcription; Autogenous Regulator Of Its Own Transcription; And Repressor Of The Expression Of Gida At A Post-Transcriptional Level. [C]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790182, Length=137, Percent_Identity=34.3065693430657, Blast_Score=84, Evalue=5e-18,
Organism=Escherichia coli, GI1787116, Length=148, Percent_Identity=31.7567567567568, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI87081742, Length=151, Percent_Identity=27.8145695364238, Blast_Score=68, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR001845
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 19714; Mature: 19583

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGHLDLIDLKIIESLGGNGRIRLSELAEVVGLSIPSVSERLDKLQKNGIIKGFTMEVDE
CCCCCHHHHHHHHHHCCCCCCEEHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEECCC
RQLGFDIQAFVRVRVDSSKHYKSFVEHVMKEEEIMECYSVTGEGSHILKVMTHNTASLER
HHHCCCHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHH
FLSRIQSWPGVLGTNTSIVLSQLKKNNRICAEIVRNNLQDRQVLITFDEKKSKK
HHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEECCCCCCC
>Mature Secondary Structure 
SGHLDLIDLKIIESLGGNGRIRLSELAEVVGLSIPSVSERLDKLQKNGIIKGFTMEVDE
CCCCHHHHHHHHHHCCCCCCEEHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEECCC
RQLGFDIQAFVRVRVDSSKHYKSFVEHVMKEEEIMECYSVTGEGSHILKVMTHNTASLER
HHHCCCHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHH
FLSRIQSWPGVLGTNTSIVLSQLKKNNRICAEIVRNNLQDRQVLITFDEKKSKK
HHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]