| Definition | Chlorobium tepidum TLS, complete genome. |
|---|---|
| Accession | NC_002932 |
| Length | 2,154,946 |
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The map label for this gene is dppD [C]
Identifier: 21673487
GI number: 21673487
Start: 653866
End: 654831
Strand: Direct
Name: dppD [C]
Synonym: CT0655
Alternate gene names: 21673487
Gene position: 653866-654831 (Clockwise)
Preceding gene: 21673481
Following gene: 21673488
Centisome position: 30.34
GC content: 62.11
Gene sequence:
>966_bases ATGGAGCATATTCTCGAACTCAAGGATCTGAAAACCTGGTACCGCACCGATAGCGGTATCGCCAAGGCTGTCGATGGCGT CAGCTTTTCGCTCGCGCAGAACTGCATCATCGGCATCGTCGGTGAGTCGGGGTGCGGCAAGTCGGTGACGGCGCTGTCGA TCATGCGCCTCGTGCCGATGCCGCCGGGCTACTTCGCCGGGGGCGATATTCTCTGGAAAGGGCGCAGCATCGTCAAGGCT ACCGAGGCCGAGATGCGCAAGATTCGCGGCAACGAGATCGCCATGATCTTTCAGGAGCCGATGAGCTCGCTCAATCCGGT CTTCACCTGTGGCGACCAGATCATGGAGCAGATTCTCAACCATCGCGACGTGAGCAAGCCGGAAGCGCGGCGGCAGGCGG TCGAGCTGCTCAACATGGTCGGCATTCCGAATCCTTCCGAGCGCATCGACTCCTACCCGCACGAGATGTCCGGCGGAATG CGGCAGCGGGTGATGATCGCCATGGCTTTGTCCTGCGGGCCTGAGTTGCTCATCGCCGACGAGCCGACCACGGCGCTCGA TGTGACGGTGCAAGCGCAGATTCTGGAGCTGATCGGCAAGTTGCGCGAGGAGCGGGGCATGAGCGTGATGCTCATCACGC ACGACTTTGGCGTGGTGGCTGAACTGTGCGAGGAGGTGGTCGTGATGTACGCTTCGCGCATCGCCGAGAGCGGCACCGTG CGGCACATTTTCGAGAATCCGCTCCATCCTTATACGCAGGGGTTGCTGAAATCGATTCCGCGTCTCGGCGCGAAAAAGGA GCGCCTGAACGTGATCGAGGGCAACGTGCCGAGCGCCACCCGTTTGCCGGATGGCTGCCGGTTCGCCGGGCGCTGTCCGC TGGCCGATGACCATTGCCGCCGGGAGCAGCCGCCGATTCTCGAATATGAACCGGGTCACCGGGCGGCCTGCTGGAAAATC ACCTGA
Upstream 100 bases:
>100_bases CAGGCTTGCGTGGCCTGCATTAACATCTTTGTCTGTCGTACATTCAATCTCGTAAAATGTCAAGAGCGTCACTGGCTGAC TGGCTCGGCGTAATCGAATT
Downstream 100 bases:
>100_bases ACTGAACACAACTGAACGAGCATGGCTGAAACCTCCATACTGATCGTCGAAGATGACCGGAACCTTGCCGGACTCCTGAA GTACAACCTTGAAAAAGCCG
Product: peptide ABC transporter, ATP-binding protein
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 321; Mature: 321
Protein sequence:
>321_residues MEHILELKDLKTWYRTDSGIAKAVDGVSFSLAQNCIIGIVGESGCGKSVTALSIMRLVPMPPGYFAGGDILWKGRSIVKA TEAEMRKIRGNEIAMIFQEPMSSLNPVFTCGDQIMEQILNHRDVSKPEARRQAVELLNMVGIPNPSERIDSYPHEMSGGM RQRVMIAMALSCGPELLIADEPTTALDVTVQAQILELIGKLREERGMSVMLITHDFGVVAELCEEVVVMYASRIAESGTV RHIFENPLHPYTQGLLKSIPRLGAKKERLNVIEGNVPSATRLPDGCRFAGRCPLADDHCRREQPPILEYEPGHRAACWKI T
Sequences:
>Translated_321_residues MEHILELKDLKTWYRTDSGIAKAVDGVSFSLAQNCIIGIVGESGCGKSVTALSIMRLVPMPPGYFAGGDILWKGRSIVKA TEAEMRKIRGNEIAMIFQEPMSSLNPVFTCGDQIMEQILNHRDVSKPEARRQAVELLNMVGIPNPSERIDSYPHEMSGGM RQRVMIAMALSCGPELLIADEPTTALDVTVQAQILELIGKLREERGMSVMLITHDFGVVAELCEEVVVMYASRIAESGTV RHIFENPLHPYTQGLLKSIPRLGAKKERLNVIEGNVPSATRLPDGCRFAGRCPLADDHCRREQPPILEYEPGHRAACWKI T >Mature_321_residues MEHILELKDLKTWYRTDSGIAKAVDGVSFSLAQNCIIGIVGESGCGKSVTALSIMRLVPMPPGYFAGGDILWKGRSIVKA TEAEMRKIRGNEIAMIFQEPMSSLNPVFTCGDQIMEQILNHRDVSKPEARRQAVELLNMVGIPNPSERIDSYPHEMSGGM RQRVMIAMALSCGPELLIADEPTTALDVTVQAQILELIGKLREERGMSVMLITHDFGVVAELCEEVVVMYASRIAESGTV RHIFENPLHPYTQGLLKSIPRLGAKKERLNVIEGNVPSATRLPDGCRFAGRCPLADDHCRREQPPILEYEPGHRAACWKI T
Specific function: Probably part of a binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI148612844, Length=252, Percent_Identity=28.968253968254, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI255708477, Length=252, Percent_Identity=28.968253968254, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI42741659, Length=224, Percent_Identity=29.4642857142857, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI9961252, Length=235, Percent_Identity=27.2340425531915, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI9665248, Length=250, Percent_Identity=26, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI4505771, Length=235, Percent_Identity=27.2340425531915, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI9961250, Length=236, Percent_Identity=26.6949152542373, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI21536376, Length=212, Percent_Identity=27.3584905660377, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI171184400, Length=262, Percent_Identity=28.2442748091603, Blast_Score=66, Evalue=5e-11, Organism=Escherichia coli, GI1789963, Length=314, Percent_Identity=47.4522292993631, Blast_Score=310, Evalue=1e-85, Organism=Escherichia coli, GI48994883, Length=318, Percent_Identity=48.4276729559748, Blast_Score=308, Evalue=2e-85, Organism=Escherichia coli, GI1787759, Length=317, Percent_Identity=45.4258675078864, Blast_Score=276, Evalue=2e-75, Organism=Escherichia coli, GI145693107, Length=310, Percent_Identity=47.4193548387097, Blast_Score=269, Evalue=1e-73, Organism=Escherichia coli, GI1788506, Length=257, Percent_Identity=47.4708171206226, Blast_Score=242, Evalue=2e-65, Organism=Escherichia coli, GI1787500, Length=321, Percent_Identity=39.8753894080997, Blast_Score=230, Evalue=8e-62, Organism=Escherichia coli, GI1789962, Length=324, Percent_Identity=39.1975308641975, Blast_Score=229, Evalue=1e-61, Organism=Escherichia coli, GI1787548, Length=304, Percent_Identity=35.8552631578947, Blast_Score=198, Evalue=3e-52, Organism=Escherichia coli, GI1787758, Length=324, Percent_Identity=35.1851851851852, Blast_Score=184, Evalue=5e-48, Organism=Escherichia coli, GI1789890, Length=235, Percent_Identity=37.8723404255319, Blast_Score=150, Evalue=1e-37, Organism=Escherichia coli, GI48994997, Length=240, Percent_Identity=36.6666666666667, Blast_Score=148, Evalue=5e-37, Organism=Escherichia coli, GI1786398, Length=259, Percent_Identity=32.046332046332, Blast_Score=132, Evalue=3e-32, Organism=Escherichia coli, GI1787547, Length=266, Percent_Identity=29.3233082706767, Blast_Score=125, Evalue=5e-30, Organism=Escherichia coli, GI1789891, Length=217, Percent_Identity=33.6405529953917, Blast_Score=122, Evalue=3e-29, Organism=Escherichia coli, GI1787029, Length=256, Percent_Identity=31.640625, Blast_Score=118, Evalue=4e-28, Organism=Escherichia coli, GI1789032, Length=242, Percent_Identity=30.1652892561983, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI1788225, Length=255, Percent_Identity=28.6274509803922, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI87081834, Length=224, Percent_Identity=31.6964285714286, Blast_Score=105, Evalue=5e-24, Organism=Escherichia coli, GI1788644, Length=178, Percent_Identity=34.8314606741573, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1790162, Length=253, Percent_Identity=24.1106719367589, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1786703, Length=236, Percent_Identity=30.0847457627119, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI1787370, Length=260, Percent_Identity=27.3076923076923, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI1787712, Length=310, Percent_Identity=26.7741935483871, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1786872, Length=256, Percent_Identity=26.953125, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI87081709, Length=246, Percent_Identity=24.7967479674797, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787089, Length=237, Percent_Identity=30.8016877637131, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI87081791, Length=266, Percent_Identity=28.1954887218045, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1788450, Length=236, Percent_Identity=27.5423728813559, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1787105, Length=229, Percent_Identity=29.6943231441048, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1788761, Length=261, Percent_Identity=24.1379310344828, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1789672, Length=260, Percent_Identity=26.9230769230769, Blast_Score=83, Evalue=3e-17, Organism=Escherichia coli, GI1786563, Length=214, Percent_Identity=30.8411214953271, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1790739, Length=265, Percent_Identity=26.4150943396226, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1789991, Length=240, Percent_Identity=27.5, Blast_Score=75, Evalue=7e-15, Organism=Escherichia coli, GI1790467, Length=239, Percent_Identity=25.1046025104602, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1786345, Length=230, Percent_Identity=26.5217391304348, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1789873, Length=202, Percent_Identity=29.7029702970297, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1786803, Length=239, Percent_Identity=23.8493723849372, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI87082267, Length=263, Percent_Identity=27.3764258555133, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1786319, Length=245, Percent_Identity=26.1224489795918, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1787112, Length=260, Percent_Identity=27.6923076923077, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1789586, Length=225, Percent_Identity=24, Blast_Score=69, Evalue=6e-13, Organism=Escherichia coli, GI1787164, Length=239, Percent_Identity=28.4518828451883, Blast_Score=68, Evalue=8e-13, Organism=Escherichia coli, GI1789593, Length=242, Percent_Identity=26.4462809917355, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1790190, Length=232, Percent_Identity=26.2931034482759, Blast_Score=66, Evalue=4e-12, Organism=Escherichia coli, GI48995001, Length=212, Percent_Identity=26.8867924528302, Blast_Score=66, Evalue=4e-12, Organism=Escherichia coli, GI48994943, Length=230, Percent_Identity=24.7826086956522, Blast_Score=65, Evalue=7e-12, Organism=Escherichia coli, GI1788165, Length=91, Percent_Identity=38.4615384615385, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1786654, Length=248, Percent_Identity=22.5806451612903, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1787143, Length=230, Percent_Identity=27.3913043478261, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1789864, Length=236, Percent_Identity=25, Blast_Score=62, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17541710, Length=224, Percent_Identity=30.3571428571429, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI115534520, Length=230, Percent_Identity=28.695652173913, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI193208177, Length=224, Percent_Identity=27.2321428571429, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17543740, Length=232, Percent_Identity=28.448275862069, Blast_Score=66, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17565938, Length=253, Percent_Identity=27.6679841897233, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17567265, Length=229, Percent_Identity=24.8908296943231, Blast_Score=65, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=261, Percent_Identity=28.3524904214559, Blast_Score=77, Evalue=3e-15, Organism=Saccharomyces cerevisiae, GI6322980, Length=266, Percent_Identity=24.0601503759398, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI23397593, Length=230, Percent_Identity=28.2608695652174, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI85726357, Length=253, Percent_Identity=24.901185770751, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 35521; Mature: 35521
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 7.5 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 7.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEHILELKDLKTWYRTDSGIAKAVDGVSFSLAQNCIIGIVGESGCGKSVTALSIMRLVPM CCCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCC PPGYFAGGDILWKGRSIVKATEAEMRKIRGNEIAMIFQEPMSSLNPVFTCGDQIMEQILN CCCCCCCCCEEECCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHHHHHHHHH HRDVSKPEARRQAVELLNMVGIPNPSERIDSYPHEMSGGMRQRVMIAMALSCGPELLIAD HCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHCCCHHHHHHHHHHHHCCCEEEEEC EPTTALDVTVQAQILELIGKLREERGMSVMLITHDFGVVAELCEEVVVMYASRIAESGTV CCCCEEEHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCC RHIFENPLHPYTQGLLKSIPRLGAKKERLNVIEGNVPSATRLPDGCRFAGRCPLADDHCR HHHHHCCCCHHHHHHHHHHHHCCCCHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCHHHC REQPPILEYEPGHRAACWKIT CCCCCEEEECCCCCCEEEECC >Mature Secondary Structure MEHILELKDLKTWYRTDSGIAKAVDGVSFSLAQNCIIGIVGESGCGKSVTALSIMRLVPM CCCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCC PPGYFAGGDILWKGRSIVKATEAEMRKIRGNEIAMIFQEPMSSLNPVFTCGDQIMEQILN CCCCCCCCCEEECCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHHHHHHHHH HRDVSKPEARRQAVELLNMVGIPNPSERIDSYPHEMSGGMRQRVMIAMALSCGPELLIAD HCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHCCCHHHHHHHHHHHHCCCEEEEEC EPTTALDVTVQAQILELIGKLREERGMSVMLITHDFGVVAELCEEVVVMYASRIAESGTV CCCCEEEHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCC RHIFENPLHPYTQGLLKSIPRLGAKKERLNVIEGNVPSATRLPDGCRFAGRCPLADDHCR HHHHHCCCCHHHHHHHHHHHHCCCCHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCHHHC REQPPILEYEPGHRAACWKIT CCCCCEEEECCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8796346; 9163424 [H]