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The map label for this gene is rtcB [C]

Identifier: 21673436

GI number: 21673436

Start: 602424

End: 603821

Strand: Direct

Name: rtcB [C]

Synonym: CT0601

Alternate gene names: 21673436

Gene position: 602424-603821 (Clockwise)

Preceding gene: 21673434

Following gene: 21673439

Centisome position: 27.96

GC content: 62.52

Gene sequence:

>1398_bases
ATGGAGAGGTCGGCAATCAGGCAGATTTCCGGTTGGCTTTGGGAGATTCCGCGTTCGTACCGCAGCGACATGCGGGTGCC
CGCGCGTTTTTACGCATCCGAAGCGATGCTGGAGCAGATTCTCGCCGATCGTTCGCTGGAGCAGCTCGTCAACGTCGCCA
CGCTGCCGGGTATTGTCGGTTTTGCGCTGGCGATGCCTGACATTCACGAGGGTTACGGCTTTCCGATTGGCGGCGTGGCG
GCGTTTGACCCCGATGCGGGCATCATTTCGCCCGGCGGTATCGGCTACGACATCAACTGCGGCGTGCGTCTCTTGGCAAC
CAGCCAGCCTTTCGAGAGTGTTCGCGAGAAGATTCCCGATCTCGTCAAAGAGATCTACCGGCAGGTTCCCTCCGGCGTCG
GGCATGGAAACCGGATCACCTTTTCATCGAAACAGCTTGAGCAGATTCTTCGTGATGGTGCGCCCCGCATGGTGGCGTTT
GGTTACGGAGAACCGGAAGACCTTGGCCATATCGAGTCCGGAGGCGTGATCGATGTGGCCGATCCGTCGAAGGTTTCACA
GTACGCGAAGCAGCGGGGTGGCGATCAGCTCGGCACGCTCGGCACGGGCAACCATTTCGTGGAGATCGATCGGATCGATG
CCATTTTCGATCAGGAGGCCGCCGTGCGCATGGGCTTGTTCGAGGGGCAGATCGTCATTCAGCTCCACACCGGTTCGCGC
GGTCTCGGCCACCAGATCGCCACCGATTACATCCGTGTCATGAACCGCGCCATGCCGAAATACGGCATCGAGGTGCCCGA
TCGGGAGCTTGCCTGTGCGCCGTTCTGCTCGCCGGAGGGGCAGGAGTACTTCAGCGCCATGTCGGCGGGCGCGAACTTCG
CGTGGGCGAACCGCCAGCTCATCACCTGGGAGATTCGGCAGGCGTGGCGCGCGGTCGTCGGCGACGATCCGTTGCGCGTG
GTTTATGACGTGGCGCACAACATCGCCAAGGTCGAGACGCACGAAATCGACGGCCATCGCCGCCAGCTCCTCGTGCACCG
CAAGGGCGCGACCCGCGCGTTTGTCGGCCAGCCGGTGATCATTCCCGGCAGCATGGGCACGGCCTCGTTCGTGTTGGAAG
GCGGGCTGGCCTCGATGCACGAAAGCTTCGGTTCGTCATGCCATGGTGCAGGCCGCCGCATGTCGCGGACGAAAGCCAAG
CACATGGTGCAGGGCAGCCAGCTCAGGCAGGAACTCGAAGCGATCGGCGTCTCCGTGCAGGCCGGTTCGATGCAGGGTCT
CGCCGAGGAGGCTTCCGCCGCCTATAAGGATATCGGCGAAGTGGTCAGCACTGTCGTCTCGGCAGGCATCGCCCGAAAAG
TGGTGAGGCTCGTACCGGTAGGGGTGATGAAAGGGTGA

Upstream 100 bases:

>100_bases
GTTGAGGTGCTTCAGGGATGTTTCGCTGGAACGCTTACCTGCGGCTATTGGTTCTCTGTTTTCCCCGGTGAAAACGATGA
ATGAAACCAACGGAGGCGAG

Downstream 100 bases:

>100_bases
AGAGAATTAAGAAAGAGGGGGCACTGCTTGCCCTTCCTTTTCTCCGAATTTATTATCCCCGCGGGTGGAATGTTTTGTGC
ACTTCCTTGATGAACGAGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 465; Mature: 465

Protein sequence:

>465_residues
MERSAIRQISGWLWEIPRSYRSDMRVPARFYASEAMLEQILADRSLEQLVNVATLPGIVGFALAMPDIHEGYGFPIGGVA
AFDPDAGIISPGGIGYDINCGVRLLATSQPFESVREKIPDLVKEIYRQVPSGVGHGNRITFSSKQLEQILRDGAPRMVAF
GYGEPEDLGHIESGGVIDVADPSKVSQYAKQRGGDQLGTLGTGNHFVEIDRIDAIFDQEAAVRMGLFEGQIVIQLHTGSR
GLGHQIATDYIRVMNRAMPKYGIEVPDRELACAPFCSPEGQEYFSAMSAGANFAWANRQLITWEIRQAWRAVVGDDPLRV
VYDVAHNIAKVETHEIDGHRRQLLVHRKGATRAFVGQPVIIPGSMGTASFVLEGGLASMHESFGSSCHGAGRRMSRTKAK
HMVQGSQLRQELEAIGVSVQAGSMQGLAEEASAAYKDIGEVVSTVVSAGIARKVVRLVPVGVMKG

Sequences:

>Translated_465_residues
MERSAIRQISGWLWEIPRSYRSDMRVPARFYASEAMLEQILADRSLEQLVNVATLPGIVGFALAMPDIHEGYGFPIGGVA
AFDPDAGIISPGGIGYDINCGVRLLATSQPFESVREKIPDLVKEIYRQVPSGVGHGNRITFSSKQLEQILRDGAPRMVAF
GYGEPEDLGHIESGGVIDVADPSKVSQYAKQRGGDQLGTLGTGNHFVEIDRIDAIFDQEAAVRMGLFEGQIVIQLHTGSR
GLGHQIATDYIRVMNRAMPKYGIEVPDRELACAPFCSPEGQEYFSAMSAGANFAWANRQLITWEIRQAWRAVVGDDPLRV
VYDVAHNIAKVETHEIDGHRRQLLVHRKGATRAFVGQPVIIPGSMGTASFVLEGGLASMHESFGSSCHGAGRRMSRTKAK
HMVQGSQLRQELEAIGVSVQAGSMQGLAEEASAAYKDIGEVVSTVVSAGIARKVVRLVPVGVMKG
>Mature_465_residues
MERSAIRQISGWLWEIPRSYRSDMRVPARFYASEAMLEQILADRSLEQLVNVATLPGIVGFALAMPDIHEGYGFPIGGVA
AFDPDAGIISPGGIGYDINCGVRLLATSQPFESVREKIPDLVKEIYRQVPSGVGHGNRITFSSKQLEQILRDGAPRMVAF
GYGEPEDLGHIESGGVIDVADPSKVSQYAKQRGGDQLGTLGTGNHFVEIDRIDAIFDQEAAVRMGLFEGQIVIQLHTGSR
GLGHQIATDYIRVMNRAMPKYGIEVPDRELACAPFCSPEGQEYFSAMSAGANFAWANRQLITWEIRQAWRAVVGDDPLRV
VYDVAHNIAKVETHEIDGHRRQLLVHRKGATRAFVGQPVIIPGSMGTASFVLEGGLASMHESFGSSCHGAGRRMSRTKAK
HMVQGSQLRQELEAIGVSVQAGSMQGLAEEASAAYKDIGEVVSTVVSAGIARKVVRLVPVGVMKG

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=500, Percent_Identity=42.8, Blast_Score=400, Evalue=1e-111,
Organism=Escherichia coli, GI2367224, Length=407, Percent_Identity=32.1867321867322, Blast_Score=149, Evalue=5e-37,
Organism=Caenorhabditis elegans, GI17506665, Length=500, Percent_Identity=43.8, Blast_Score=403, Evalue=1e-112,
Organism=Drosophila melanogaster, GI24585217, Length=499, Percent_Identity=42.4849699398798, Blast_Score=387, Evalue=1e-108,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 50423; Mature: 50423

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: PS01288 UPF0027

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERSAIRQISGWLWEIPRSYRSDMRVPARFYASEAMLEQILADRSLEQLVNVATLPGIVG
CCHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FALAMPDIHEGYGFPIGGVAAFDPDAGIISPGGIGYDINCGVRLLATSQPFESVREKIPD
HHHHCCCHHCCCCCCCCCEEEECCCCCEECCCCCCEECCCCEEEEECCCCHHHHHHHHHH
LVKEIYRQVPSGVGHGNRITFSSKQLEQILRDGAPRMVAFGYGEPEDLGHIESGGVIDVA
HHHHHHHHCCCCCCCCCEEEECHHHHHHHHHCCCCCEEEECCCCCHHCCCCCCCCEEECC
DPSKVSQYAKQRGGDQLGTLGTGNHFVEIDRIDAIFDQEAAVRMGLFEGQIVIQLHTGSR
CHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHCCHHHHHHEEECCEEEEEEECCCC
GLGHQIATDYIRVMNRAMPKYGIEVPDRELACAPFCSPEGQEYFSAMSAGANFAWANRQL
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHCCCCEEECCCEE
ITWEIRQAWRAVVGDDPLRVVYDVAHNIAKVETHEIDGHRRQLLVHRKGATRAFVGQPVI
EEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHEEEEECCCCCEEECCCCEE
IPGSMGTASFVLEGGLASMHESFGSSCHGAGRRMSRTKAKHMVQGSQLRQELEAIGVSVQ
EECCCCCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
AGSMQGLAEEASAAYKDIGEVVSTVVSAGIARKVVRLVPVGVMKG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCC
>Mature Secondary Structure
MERSAIRQISGWLWEIPRSYRSDMRVPARFYASEAMLEQILADRSLEQLVNVATLPGIVG
CCHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FALAMPDIHEGYGFPIGGVAAFDPDAGIISPGGIGYDINCGVRLLATSQPFESVREKIPD
HHHHCCCHHCCCCCCCCCEEEECCCCCEECCCCCCEECCCCEEEEECCCCHHHHHHHHHH
LVKEIYRQVPSGVGHGNRITFSSKQLEQILRDGAPRMVAFGYGEPEDLGHIESGGVIDVA
HHHHHHHHCCCCCCCCCEEEECHHHHHHHHHCCCCCEEEECCCCCHHCCCCCCCCEEECC
DPSKVSQYAKQRGGDQLGTLGTGNHFVEIDRIDAIFDQEAAVRMGLFEGQIVIQLHTGSR
CHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHCCHHHHHHEEECCEEEEEEECCCC
GLGHQIATDYIRVMNRAMPKYGIEVPDRELACAPFCSPEGQEYFSAMSAGANFAWANRQL
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHCCCCEEECCCEE
ITWEIRQAWRAVVGDDPLRVVYDVAHNIAKVETHEIDGHRRQLLVHRKGATRAFVGQPVI
EEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHEEEEECCCCCEEECCCCEE
IPGSMGTASFVLEGGLASMHESFGSSCHGAGRRMSRTKAKHMVQGSQLRQELEAIGVSVQ
EECCCCCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
AGSMQGLAEEASAAYKDIGEVVSTVVSAGIARKVVRLVPVGVMKG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA