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The map label for this gene is ydeM [C]

Identifier: 21673256

GI number: 21673256

Start: 431418

End: 432428

Strand: Direct

Name: ydeM [C]

Synonym: CT0417

Alternate gene names: 21673256

Gene position: 431418-432428 (Clockwise)

Preceding gene: 21673255

Following gene: 21673257

Centisome position: 20.02

GC content: 62.91

Gene sequence:

>1011_bases
ATGCTCGTCGTCACCACAGCATGTAATCTCGATTGCGCCTATTGCTACGAAGGCGGCGGCAACGGTCAGGGAGAGATGAT
GGATCTCGATACGGCTCTGCGTGCGCTCGATCTGGTGGCCGCATCGAACCAGCCCTTCCATGTGCAGCTGACCGGCGGCG
AGCCGCTGCTTGCCGGAGAGCTTGTTTTCAGAATTCTGGAGTATATCAGAAACAACAATCTGCCCGCTACTACCGCCATC
CAGACCAACGGCGTGCTGCTCGACCATCAGACCGCCCGCCGTTTGCACTCGTTTGGCACCGCTGTCGGGGTCAGCGTCGA
TGGACTGCCCGCCATTCAGGAGCAGCTTCGTGGCCAGGGCGCTGCAACCTGGAAAGCCCTCGCCATGCTCGACAGCGAGC
GGGTGCCGTTTTCAGTCACGACGGTTTTGTCGTCGCGCAATACCCGCGACTTATCAACGCTCGGCATGGCGCTGCATTCG
ATGCCGGCGGCCTCGGCTATCGGCCTGGATCTGCTGGTGCAAAAAGGCTCTGCGGCGGCGAAAATTGGCGTGCAGCCACC
GGATGCCGTCACGATCCGCAGCGGCGTCACCCGCCTGCTCGCCACGCTCGATGTGCTGAATGCGCAGCGGAGCCGTCCTC
TCATTTTGCGCGAACGGCAGACGGTGCTCAAGGCGCTCGGTCGCGATGAAGCTCGTCCCTACTGCCAGGCCTGCACCGGT
TCGAGCCTCGCCGTCACGCCGCGCGGTGAACTCTATCCCTGCACCCAAACGCTCGGTGATGCCCGCTTCCACCTCGGTAC
GCTCGATCATCCCCGTCTCTCCGGCACGGCGCTGCCCGACGGGCGGTTGCCGAAGCGCGAGGAGTGTGCCGGATGCGGGC
TTCAGGGGCGTTGCCCTGGCGACTGTCCGTCGCGTTTGCACTACAACGGCGCTGACGGGGCCGGTCTGGTCTGCGCTCTC
TATCGAACCATCTGCGACTATTGTCTGTACAAAGGAGAGATACCATCATGA

Upstream 100 bases:

>100_bases
TTGGCAAGATCGAACAACAGCAGCGGGCGTTACAACGCTTTTTTCCTGAATGCCGAATCAAGGAGAATTTGTATTGAACA
ATCACCGGATTTCATCGCTC

Downstream 100 bases:

>100_bases
AACCAATCTCGCTCTGCTATTTCTGTGTCAACCCCTCCGAAATCTCCACGCTCAGCGCCGGACTCAGGCGCTACAACGAC
GGAGGCGGTCAGGCGGAACT

Product: AslB/AtsB family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MLVVTTACNLDCAYCYEGGGNGQGEMMDLDTALRALDLVAASNQPFHVQLTGGEPLLAGELVFRILEYIRNNNLPATTAI
QTNGVLLDHQTARRLHSFGTAVGVSVDGLPAIQEQLRGQGAATWKALAMLDSERVPFSVTTVLSSRNTRDLSTLGMALHS
MPAASAIGLDLLVQKGSAAAKIGVQPPDAVTIRSGVTRLLATLDVLNAQRSRPLILRERQTVLKALGRDEARPYCQACTG
SSLAVTPRGELYPCTQTLGDARFHLGTLDHPRLSGTALPDGRLPKREECAGCGLQGRCPGDCPSRLHYNGADGAGLVCAL
YRTICDYCLYKGEIPS

Sequences:

>Translated_336_residues
MLVVTTACNLDCAYCYEGGGNGQGEMMDLDTALRALDLVAASNQPFHVQLTGGEPLLAGELVFRILEYIRNNNLPATTAI
QTNGVLLDHQTARRLHSFGTAVGVSVDGLPAIQEQLRGQGAATWKALAMLDSERVPFSVTTVLSSRNTRDLSTLGMALHS
MPAASAIGLDLLVQKGSAAAKIGVQPPDAVTIRSGVTRLLATLDVLNAQRSRPLILRERQTVLKALGRDEARPYCQACTG
SSLAVTPRGELYPCTQTLGDARFHLGTLDHPRLSGTALPDGRLPKREECAGCGLQGRCPGDCPSRLHYNGADGAGLVCAL
YRTICDYCLYKGEIPS
>Mature_336_residues
MLVVTTACNLDCAYCYEGGGNGQGEMMDLDTALRALDLVAASNQPFHVQLTGGEPLLAGELVFRILEYIRNNNLPATTAI
QTNGVLLDHQTARRLHSFGTAVGVSVDGLPAIQEQLRGQGAATWKALAMLDSERVPFSVTTVLSSRNTRDLSTLGMALHS
MPAASAIGLDLLVQKGSAAAKIGVQPPDAVTIRSGVTRLLATLDVLNAQRSRPLILRERQTVLKALGRDEARPYCQACTG
SSLAVTPRGELYPCTQTLGDARFHLGTLDHPRLSGTALPDGRLPKREECAGCGLQGRCPGDCPSRLHYNGADGAGLVCAL
YRTICDYCLYKGEIPS

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 35758; Mature: 35758

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: PS01305 MOAA_NIFB_PQQE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVVTTACNLDCAYCYEGGGNGQGEMMDLDTALRALDLVAASNQPFHVQLTGGEPLLAGE
CEEEEEECCCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHH
LVFRILEYIRNNNLPATTAIQTNGVLLDHQTARRLHSFGTAVGVSVDGLPAIQEQLRGQG
HHHHHHHHHHCCCCCCEEEEECCCEEECCHHHHHHHHHCCEEECCCCCCHHHHHHHCCCC
AATWKALAMLDSERVPFSVTTVLSSRNTRDLSTLGMALHSMPAASAIGLDLLVQKGSAAA
CHHHHHHHHHCCCCCCEEEEEEHHCCCCCHHHHHHHHHHCCCCHHHHCHHHEEECCCCEE
KIGVQPPDAVTIRSGVTRLLATLDVLNAQRSRPLILRERQTVLKALGRDEARPYCQACTG
EECCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHCCCCCCHHHHHCCC
SSLAVTPRGELYPCTQTLGDARFHLGTLDHPRLSGTALPDGRLPKREECAGCGLQGRCPG
CCEEECCCCCEEEHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCC
DCPSRLHYNGADGAGLVCALYRTICDYCLYKGEIPS
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLVVTTACNLDCAYCYEGGGNGQGEMMDLDTALRALDLVAASNQPFHVQLTGGEPLLAGE
CEEEEEECCCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHH
LVFRILEYIRNNNLPATTAIQTNGVLLDHQTARRLHSFGTAVGVSVDGLPAIQEQLRGQG
HHHHHHHHHHCCCCCCEEEEECCCEEECCHHHHHHHHHCCEEECCCCCCHHHHHHHCCCC
AATWKALAMLDSERVPFSVTTVLSSRNTRDLSTLGMALHSMPAASAIGLDLLVQKGSAAA
CHHHHHHHHHCCCCCCEEEEEEHHCCCCCHHHHHHHHHHCCCCHHHHCHHHEEECCCCEE
KIGVQPPDAVTIRSGVTRLLATLDVLNAQRSRPLILRERQTVLKALGRDEARPYCQACTG
EECCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHCCCCCCHHHHHCCC
SSLAVTPRGELYPCTQTLGDARFHLGTLDHPRLSGTALPDGRLPKREECAGCGLQGRCPG
CCEEECCCCCEEEHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCC
DCPSRLHYNGADGAGLVCALYRTICDYCLYKGEIPS
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]