| Definition | Chlorobium tepidum TLS, complete genome. |
|---|---|
| Accession | NC_002932 |
| Length | 2,154,946 |
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The map label for this gene is cbiK [H]
Identifier: 21673228
GI number: 21673228
Start: 403987
End: 404928
Strand: Reverse
Name: cbiK [H]
Synonym: CT0389
Alternate gene names: 21673228
Gene position: 404928-403987 (Counterclockwise)
Preceding gene: 21673229
Following gene: 21673227
Centisome position: 18.79
GC content: 60.19
Gene sequence:
>942_bases ATGAGTAAGCACAAGAAACGGTCACAGATCAACAAGAAGGCGATTCTGCTTGCCCATTTCGGCACCACCTATCCCTCGGC ACTGCCGTCGCTGGAGAACATCCGGAGGCAGGTGCGGGCGCGGATTCCCGGCATTGAGGTGCGGCACTGCTTTACCTCGA ACATGGTGCGCAACATCTGGTCGGCGCGGCGGCGCGATCCGCAACGCTGGCTCGCCGAGGGCGTTGCCGACGAGTTCCTG AACGTGCAGGGGTTTCTCGGCGCGATCGGTAATTTACAGGACGGCAACTACCGGACGATCATCGTGCAGCCGACCCACAT GTACCACGGCGAGCAGTTTGAGGATCTGAAATCCTACGTCTCGGCGCTCCAGTCGATCCGCACCATCAAGCGGGTCTGGT CGCCCTTCGAGAAGGTGGTGCTGTCGCGTCCGGCGCTTGGCACCTGCGGCGTGGAGCACGACTACACCGAGGACATCAAA GAGGTGGCGGCGCTGTTTGATGATGATGTCGAACGCGCCCGCCAGCTCGACGCGGCGCTGGTTTATGTGGCACACGGCAA CGACTTCTTCTCGTCGGGTGTGTTCCGCGAAACCGGTGACGTGATGCGCAGTCGCTATCCGGGCGCACAGATTCACATCG GTATGATCGAGGGGCGGCCCGGCGTGGAGGAGATCGTCGCCGAGGTGACGGGCAAAGGGTGCACGACGGTGCTGTTGCGC CCCTTCATGATAACGGCGGGTGACCACGCGCACAACGACATTGCCGATGACGATACCGGTTCGTGGAAAGGAGCGTTCGA GGCGGCGGGATGTCGTGTCGAAATCCGCATGGAGGGACTTGGCTCGGATGATCGTTTCGCCTCGATCTTCGCCAAGCGGA TTCTTGAAACCGCTGAAGATCATGGTATCGATCTGTTTTCAGCATCCGACAAAATCGATTAA
Upstream 100 bases:
>100_bases CGGTGGTGTTCATCATCGGCGAACACGCCGTTCCCGAGGGGGCGTGCCCAGATCAGTCCGATGCGTCCGATCCGTCTGAT CAAAATCACAATGAACAGCA
Downstream 100 bases:
>100_bases CGCTTTGAACAACCGTTTGCAACCAATGAACAATCAAGGCTCGATCATCAGCGTTTCGCTTGGACCGGGTGATCCCGGGC TGATTACCGTCAAGGCGCTT
Product: cobalt chelatase CbiK, putative
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 313; Mature: 312
Protein sequence:
>313_residues MSKHKKRSQINKKAILLAHFGTTYPSALPSLENIRRQVRARIPGIEVRHCFTSNMVRNIWSARRRDPQRWLAEGVADEFL NVQGFLGAIGNLQDGNYRTIIVQPTHMYHGEQFEDLKSYVSALQSIRTIKRVWSPFEKVVLSRPALGTCGVEHDYTEDIK EVAALFDDDVERARQLDAALVYVAHGNDFFSSGVFRETGDVMRSRYPGAQIHIGMIEGRPGVEEIVAEVTGKGCTTVLLR PFMITAGDHAHNDIADDDTGSWKGAFEAAGCRVEIRMEGLGSDDRFASIFAKRILETAEDHGIDLFSASDKID
Sequences:
>Translated_313_residues MSKHKKRSQINKKAILLAHFGTTYPSALPSLENIRRQVRARIPGIEVRHCFTSNMVRNIWSARRRDPQRWLAEGVADEFL NVQGFLGAIGNLQDGNYRTIIVQPTHMYHGEQFEDLKSYVSALQSIRTIKRVWSPFEKVVLSRPALGTCGVEHDYTEDIK EVAALFDDDVERARQLDAALVYVAHGNDFFSSGVFRETGDVMRSRYPGAQIHIGMIEGRPGVEEIVAEVTGKGCTTVLLR PFMITAGDHAHNDIADDDTGSWKGAFEAAGCRVEIRMEGLGSDDRFASIFAKRILETAEDHGIDLFSASDKID >Mature_312_residues SKHKKRSQINKKAILLAHFGTTYPSALPSLENIRRQVRARIPGIEVRHCFTSNMVRNIWSARRRDPQRWLAEGVADEFLN VQGFLGAIGNLQDGNYRTIIVQPTHMYHGEQFEDLKSYVSALQSIRTIKRVWSPFEKVVLSRPALGTCGVEHDYTEDIKE VAALFDDDVERARQLDAALVYVAHGNDFFSSGVFRETGDVMRSRYPGAQIHIGMIEGRPGVEEIVAEVTGKGCTTVLLRP FMITAGDHAHNDIADDDTGSWKGAFEAAGCRVEIRMEGLGSDDRFASIFAKRILETAEDHGIDLFSASDKID
Specific function: Chelates cobalt to the cobalamin precursor as part of the anaerobic pathway to cobalamin biosynthesis [H]
COG id: COG4822
COG function: function code H; Cobalamin biosynthesis protein CbiK, Co2+ chelatase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CbiK family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010388 [H]
Pfam domain/function: PF06180 CbiK [H]
EC number: =4.99.1.3 [H]
Molecular weight: Translated: 35009; Mature: 34878
Theoretical pI: Translated: 6.59; Mature: 6.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKHKKRSQINKKAILLAHFGTTYPSALPSLENIRRQVRARIPGIEVRHCFTSNMVRNIW CCCCHHHHHHCHHEEEEEECCCCCCHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH SARRRDPQRWLAEGVADEFLNVQGFLGAIGNLQDGNYRTIIVQPTHMYHGEQFEDLKSYV HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHCCCHHHHHHHHH SALQSIRTIKRVWSPFEKVVLSRPALGTCGVEHDYTEDIKEVAALFDDDVERARQLDAAL HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEE VYVAHGNDFFSSGVFRETGDVMRSRYPGAQIHIGMIEGRPGVEEIVAEVTGKGCTTVLLR EEEECCCHHHHCCCHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHCCCCHHHHHHH PFMITAGDHAHNDIADDDTGSWKGAFEAAGCRVEIRMEGLGSDDRFASIFAKRILETAED HHHEECCCCCCCCCCCCCCCCCCCCHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH HGIDLFSASDKID CCCEEECCCCCCC >Mature Secondary Structure SKHKKRSQINKKAILLAHFGTTYPSALPSLENIRRQVRARIPGIEVRHCFTSNMVRNIW CCCHHHHHHCHHEEEEEECCCCCCHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH SARRRDPQRWLAEGVADEFLNVQGFLGAIGNLQDGNYRTIIVQPTHMYHGEQFEDLKSYV HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHCCCHHHHHHHHH SALQSIRTIKRVWSPFEKVVLSRPALGTCGVEHDYTEDIKEVAALFDDDVERARQLDAAL HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEE VYVAHGNDFFSSGVFRETGDVMRSRYPGAQIHIGMIEGRPGVEEIVAEVTGKGCTTVLLR EEEECCCHHHHCCCHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHCCCCHHHHHHH PFMITAGDHAHNDIADDDTGSWKGAFEAAGCRVEIRMEGLGSDDRFASIFAKRILETAED HHHEECCCCCCCCCCCCCCCCCCCCHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH HGIDLFSASDKID CCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8501034; 11677609; 9150215; 10451360 [H]