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The map label for this gene is rodA [H]

Identifier: 21673129

GI number: 21673129

Start: 301526

End: 302758

Strand: Direct

Name: rodA [H]

Synonym: CT0290

Alternate gene names: 21673129

Gene position: 301526-302758 (Clockwise)

Preceding gene: 161485730

Following gene: 21673132

Centisome position: 13.99

GC content: 48.34

Gene sequence:

>1233_bases
GTGATGGAAAAGTACAATAAATTTGATCTTTTATGGCTTCTGGTTCCCCTGTCGGGCCTGATCGTCATGGGACTTATGGC
TGTTTACAGCGCTACCAATGGCTCGACCGAATCGGTTCCCCTCTTTTACAAACAGCTCTCCTGGGCTGTCACAGGAGCCA
TTGCGGCCTCTATCATTTATTTCATGGATTATCGCGTCGTAAAAGATAATGCCTACTTTATGTATGCGGCTGGCATTATT
CTGCTGATAGCGGTGCTTGTCTTCGGAAAGAAGGTGGCTGGAGCGACAAGCTGGGTGCGTTTCGGTATGTTCAGTTTTCA
GCCCTCCGAACTCACCAAAATGTTTACCATCATTGCGATGGCGAGGTTTCTGTCGGACGACCAGACCGATATTGGCAACA
TGATGGATCTCGGCAAAGCGCTTGCCATTGCGCTGGTTCCCGCCGGACTTATCATGCTTCAGCCGGATATGGGCACGACG
CTGACCTGCCTGTCGTTTATCGTTCCCATGATTGTTCTGGCCGGTTTCGATCTCTATTATATTCTGCTCGGGGTGGTTCC
GGTGGCTTTGATGCTTTCCGGTTTTTTCAATCTGACCATTCTTGCGACCATTGCCGTTCTTTCGATGGTCATGTTTTTCC
TGCTCAGGAAAAAGTTTTATTTACACCAGTTCCTCGTTACCGGAGGAGGTTTGCTGGGCGGATTGCTGACCTGGAAGTTT
ACTTCAGTTATTCTCAAGCCTCACCAGATCAAGAGAATTCAAATATTTCTTGATCCGACAGCCGATCCACGGGGTGCCGG
ATACAATGCGCTTCAGGCTAAAATTGCCATTGCCTCAGGCGGGATTTTTGGGAAAGGATTTCTTCACGGCACGCAAACTC
AACTTCGGTATATTCCTGCGCAGTGGACGGATTTCATTTTCTGCGTGATTGCCGAAGAACTGGGATTTTTGGGTTCGACG
TTATTGCTTCTGCTCTTTGCGGCCCTTGTGCTTCGTCTTGTCTGGATGGTCGGAGCTATCAAGAACCGTTTCGTCGAACT
GTTGCTTGCCGGATATGCCTCGTTGCTTCTGACTCATGTGGTGATCAATATCGGTATGACTATTGGCGTTATGCCTGTTA
TTGGCGTTCCCCTTCCGTTTATTTCATATGGTGGATCCTCTCTGGTCGCGAACATGATGATGGTTGGCCTTGCCATGAAC
TTTTCAAAAAACCGGAGACATATCGGTTATTGA

Upstream 100 bases:

>100_bases
TATGATTTGGGTGCCGGGATACGTGTGGAAAACCTGTTCCGGTGGTTTATGGAGCTGTTTCCCGGCAAGATAACATGATC
TCTCTCCTCTTTACGGACAA

Downstream 100 bases:

>100_bases
GATGAGGATGAGTTTGTGTGACAAATAAAAAAAGGCCATCGTTTCGGATAGCCTTTTCGTCGAAAAAATAAAGTGATTTA
TTTCGTTGTTTTTTCGGTTA

Product: rod shape-determining protein RodA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 410

Protein sequence:

>410_residues
MMEKYNKFDLLWLLVPLSGLIVMGLMAVYSATNGSTESVPLFYKQLSWAVTGAIAASIIYFMDYRVVKDNAYFMYAAGII
LLIAVLVFGKKVAGATSWVRFGMFSFQPSELTKMFTIIAMARFLSDDQTDIGNMMDLGKALAIALVPAGLIMLQPDMGTT
LTCLSFIVPMIVLAGFDLYYILLGVVPVALMLSGFFNLTILATIAVLSMVMFFLLRKKFYLHQFLVTGGGLLGGLLTWKF
TSVILKPHQIKRIQIFLDPTADPRGAGYNALQAKIAIASGGIFGKGFLHGTQTQLRYIPAQWTDFIFCVIAEELGFLGST
LLLLLFAALVLRLVWMVGAIKNRFVELLLAGYASLLLTHVVINIGMTIGVMPVIGVPLPFISYGGSSLVANMMMVGLAMN
FSKNRRHIGY

Sequences:

>Translated_410_residues
MMEKYNKFDLLWLLVPLSGLIVMGLMAVYSATNGSTESVPLFYKQLSWAVTGAIAASIIYFMDYRVVKDNAYFMYAAGII
LLIAVLVFGKKVAGATSWVRFGMFSFQPSELTKMFTIIAMARFLSDDQTDIGNMMDLGKALAIALVPAGLIMLQPDMGTT
LTCLSFIVPMIVLAGFDLYYILLGVVPVALMLSGFFNLTILATIAVLSMVMFFLLRKKFYLHQFLVTGGGLLGGLLTWKF
TSVILKPHQIKRIQIFLDPTADPRGAGYNALQAKIAIASGGIFGKGFLHGTQTQLRYIPAQWTDFIFCVIAEELGFLGST
LLLLLFAALVLRLVWMVGAIKNRFVELLLAGYASLLLTHVVINIGMTIGVMPVIGVPLPFISYGGSSLVANMMMVGLAMN
FSKNRRHIGY
>Mature_410_residues
MMEKYNKFDLLWLLVPLSGLIVMGLMAVYSATNGSTESVPLFYKQLSWAVTGAIAASIIYFMDYRVVKDNAYFMYAAGII
LLIAVLVFGKKVAGATSWVRFGMFSFQPSELTKMFTIIAMARFLSDDQTDIGNMMDLGKALAIALVPAGLIMLQPDMGTT
LTCLSFIVPMIVLAGFDLYYILLGVVPVALMLSGFFNLTILATIAVLSMVMFFLLRKKFYLHQFLVTGGGLLGGLLTWKF
TSVILKPHQIKRIQIFLDPTADPRGAGYNALQAKIAIASGGIFGKGFLHGTQTQLRYIPAQWTDFIFCVIAEELGFLGST
LLLLLFAALVLRLVWMVGAIKNRFVELLLAGYASLLLTHVVINIGMTIGVMPVIGVPLPFISYGGSSLVANMMMVGLAMN
FSKNRRHIGY

Specific function: This is one of the proteins responsible for the rod shape of the cell [H]

COG id: COG0772

COG function: function code D; Bacterial cell division membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ftsW/rodA/spoVE family [H]

Homologues:

Organism=Escherichia coli, GI1786853, Length=383, Percent_Identity=33.9425587467363, Blast_Score=188, Evalue=7e-49,
Organism=Escherichia coli, GI1786277, Length=399, Percent_Identity=27.8195488721804, Blast_Score=126, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001182
- InterPro:   IPR018365
- InterPro:   IPR011923 [H]

Pfam domain/function: PF01098 FTSW_RODA_SPOVE [H]

EC number: NA

Molecular weight: Translated: 44955; Mature: 44955

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS00428 FTSW_RODA_SPOVE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9665876 [H]