| Definition | Chlorobium tepidum TLS, complete genome. |
|---|---|
| Accession | NC_002932 |
| Length | 2,154,946 |
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The map label for this gene is 21673112
Identifier: 21673112
GI number: 21673112
Start: 284649
End: 286193
Strand: Direct
Name: 21673112
Synonym: CT0273
Alternate gene names: NA
Gene position: 284649-286193 (Clockwise)
Preceding gene: 21673111
Following gene: 21673113
Centisome position: 13.21
GC content: 57.93
Gene sequence:
>1545_bases ATGTTCTCCAAACTCAAGCTTCTCGCGAAGGATACGGTCATCTATGGCGCGAGCACCATTCTGGCCCGCAGTCTTAACTA CGTTCTTGTTCCGCTCTACGCCAACAAGCTAACCACCTTCGACAATGGCATCCAGGCGGTGATTTATGCCAACATCGCCC TGGCGAATGTCATTTTCACCTACGGTCTCGAAACCTCTTACCTGAAGGTCGCCTCCGACGTCATCAAACGGAACGAGGAT GAACGTCCGCTGTTTTCGACGGCTTTTTTCAGCCTCTTTGTTACCTCAATCCTTTTTTCGGCGCTGATGCTGCTCTTTGC GCCGTCGATTGCCGTAGCCATCGGACTTGCACCGGAGTCTGGGGTGTTCATCCGTTACGCCGCAGCGATCCTGTTTCTCG ATACGCTGCTCGTCGTGCCATTTGCCGAACTTCGGCTGAAGCGCAAGGCGATCCCGTTTGCGCTGGCCAAGGTGATGGGC GTGGTCGGCGGCGTCATCAGCACCTTTGTGCTCATTCTCGGACTTCATGCGGGTCTGTCCGGCGTGTTCATCGGCGAGGC GCTCGGCTCGGTGGTCAGCCTGCTGTTCATTCTGCCGGTACTCAAAAATCTCAAACCCACGTTCTCGCCCGGCATGTGCC GGCAGTTGCTTGGCATTGGTTTGCCCTACGTGCCGACCGGCATCGCTGGCCTGCTCATCCACCTGATCGACCGGAATCTC CTGATCCGCATTCCGCAGCAGGACATCGACCGCCTGTATGGCGCGGGGTTCCAGGCTTCGGATATCACCGGTATCTATGG TCGGGTGGCGGCGTTTGGCGTGGCGCTCCAGATGTTCATCCAGATTTTCCGCTTCGCCTGGCAGCCGTTTTTCCTGCAAC ATGCTGACGATCCCGAAGCCAAGCCGCTCTTCAAGCAGGTGATGAATCTTTCGGGCATTGCAGTGATTGTGCTTGCCGTG GCCTGCACTTTTTTTGTGCCCGATCTGGTGCGCTACCACTGGGGCGGCAAGCTCTATCTGTTGCCGCCGAAATACTGGAT GGGCATGTCGATTCTGCCGTGGATCTTTTTCAGTTACGTGTTCGACATGATTTCAACCAACCTGTCGGCAGGCATTCTGA TTACCGGCAAGACCAAATATCTGCCGGTCGTGACCTTCGCGGGAGCCGCCGTGACGACGCTCGGGTGCTGGATTCTGATT CCGCTTGGCGGCATGGATGGCGCGGCGGTGGCGATTCTGCTCGGCGCGGCGGTGATGTGCCTCTGCATGGGGTGGTACTC GGTGCGCTTCTACCCGATCAGTTACGATTGGGGCCGCCTGTCACTCTTGCTCGGCGCGGGGCTGGCGTTCGCAGTATGGC ATGACGACCTGCTCGTCTGGCTTGCCGGTTTCGGGATCAGCGGCCTGCTTGCGATGATGGTGAAACTGCTCATCGTCTTG CTCTATCTCGTGCTCGGCACGCTCATTTTCCGCAACGAGGCGTCGGCTGTCGTGAAGATGGTGCAGAGAAAATTGCGTCC GGCGGGAAGTTCCGGCAGCCGATGA
Upstream 100 bases:
>100_bases GGACGCCGTCCGGCAGCAGAAAGCGGCGGCAGCCAAAACCAACGGCTCGACTGGCCCGGCGACCGGTAAGAACTGACCGC GACCTCCAGCAGCCCAACGA
Downstream 100 bases:
>100_bases TCCGTCTCGCCACCGTCCAGTTTACGCCACGTCTCGGGGAGCGCCAGGCGAATCTCGAAGCGATCCGGAGTTTGCTCGAT CCGGTCGAAGCGGACATTGT
Product: polysaccharide biosynthesis protein
Products: NA
Alternate protein names: O-Antigen And Teichoic Acid Export Protein; Multi Anti Extrusion Protein MatE; Polysaccharide Biosynthesis Transmembrane Protein; Polysaccharide Biosynthesis Protein Wzx
Number of amino acids: Translated: 514; Mature: 514
Protein sequence:
>514_residues MFSKLKLLAKDTVIYGASTILARSLNYVLVPLYANKLTTFDNGIQAVIYANIALANVIFTYGLETSYLKVASDVIKRNED ERPLFSTAFFSLFVTSILFSALMLLFAPSIAVAIGLAPESGVFIRYAAAILFLDTLLVVPFAELRLKRKAIPFALAKVMG VVGGVISTFVLILGLHAGLSGVFIGEALGSVVSLLFILPVLKNLKPTFSPGMCRQLLGIGLPYVPTGIAGLLIHLIDRNL LIRIPQQDIDRLYGAGFQASDITGIYGRVAAFGVALQMFIQIFRFAWQPFFLQHADDPEAKPLFKQVMNLSGIAVIVLAV ACTFFVPDLVRYHWGGKLYLLPPKYWMGMSILPWIFFSYVFDMISTNLSAGILITGKTKYLPVVTFAGAAVTTLGCWILI PLGGMDGAAVAILLGAAVMCLCMGWYSVRFYPISYDWGRLSLLLGAGLAFAVWHDDLLVWLAGFGISGLLAMMVKLLIVL LYLVLGTLIFRNEASAVVKMVQRKLRPAGSSGSR
Sequences:
>Translated_514_residues MFSKLKLLAKDTVIYGASTILARSLNYVLVPLYANKLTTFDNGIQAVIYANIALANVIFTYGLETSYLKVASDVIKRNED ERPLFSTAFFSLFVTSILFSALMLLFAPSIAVAIGLAPESGVFIRYAAAILFLDTLLVVPFAELRLKRKAIPFALAKVMG VVGGVISTFVLILGLHAGLSGVFIGEALGSVVSLLFILPVLKNLKPTFSPGMCRQLLGIGLPYVPTGIAGLLIHLIDRNL LIRIPQQDIDRLYGAGFQASDITGIYGRVAAFGVALQMFIQIFRFAWQPFFLQHADDPEAKPLFKQVMNLSGIAVIVLAV ACTFFVPDLVRYHWGGKLYLLPPKYWMGMSILPWIFFSYVFDMISTNLSAGILITGKTKYLPVVTFAGAAVTTLGCWILI PLGGMDGAAVAILLGAAVMCLCMGWYSVRFYPISYDWGRLSLLLGAGLAFAVWHDDLLVWLAGFGISGLLAMMVKLLIVL LYLVLGTLIFRNEASAVVKMVQRKLRPAGSSGSR >Mature_514_residues MFSKLKLLAKDTVIYGASTILARSLNYVLVPLYANKLTTFDNGIQAVIYANIALANVIFTYGLETSYLKVASDVIKRNED ERPLFSTAFFSLFVTSILFSALMLLFAPSIAVAIGLAPESGVFIRYAAAILFLDTLLVVPFAELRLKRKAIPFALAKVMG VVGGVISTFVLILGLHAGLSGVFIGEALGSVVSLLFILPVLKNLKPTFSPGMCRQLLGIGLPYVPTGIAGLLIHLIDRNL LIRIPQQDIDRLYGAGFQASDITGIYGRVAAFGVALQMFIQIFRFAWQPFFLQHADDPEAKPLFKQVMNLSGIAVIVLAV ACTFFVPDLVRYHWGGKLYLLPPKYWMGMSILPWIFFSYVFDMISTNLSAGILITGKTKYLPVVTFAGAAVTTLGCWILI PLGGMDGAAVAILLGAAVMCLCMGWYSVRFYPISYDWGRLSLLLGAGLAFAVWHDDLLVWLAGFGISGLLAMMVKLLIVL LYLVLGTLIFRNEASAVVKMVQRKLRPAGSSGSR
Specific function: Unknown
COG id: COG2244
COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55984; Mature: 55984
Theoretical pI: Translated: 9.81; Mature: 9.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFSKLKLLAKDTVIYGASTILARSLNYVLVPLYANKLTTFDNGIQAVIYANIALANVIFT CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHCHHHHHCCCCHHHHHHHHHHHHHHHH YGLETSYLKVASDVIKRNEDERPLFSTAFFSLFVTSILFSALMLLFAPSIAVAIGLAPES HCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEECCCCC GVFIRYAAAILFLDTLLVVPFAELRLKRKAIPFALAKVMGVVGGVISTFVLILGLHAGLS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GVFIGEALGSVVSLLFILPVLKNLKPTFSPGMCRQLLGIGLPYVPTGIAGLLIHLIDRNL HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC LIRIPQQDIDRLYGAGFQASDITGIYGRVAAFGVALQMFIQIFRFAWQPFFLQHADDPEA EEECCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEECCCCCCC KPLFKQVMNLSGIAVIVLAVACTFFVPDLVRYHWGGKLYLLPPKYWMGMSILPWIFFSYV CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHH FDMISTNLSAGILITGKTKYLPVVTFAGAAVTTLGCWILIPLGGMDGAAVAILLGAAVMC HHHHHCCCCCCEEEECCCCEEEHEEECHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHH LCMGWYSVRFYPISYDWGRLSLLLGAGLAFAVWHDDLLVWLAGFGISGLLAMMVKLLIVL HHHHHHHEEEEEEECCHHHHHHHHHCCHHEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHH LYLVLGTLIFRNEASAVVKMVQRKLRPAGSSGSR HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MFSKLKLLAKDTVIYGASTILARSLNYVLVPLYANKLTTFDNGIQAVIYANIALANVIFT CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHCHHHHHCCCCHHHHHHHHHHHHHHHH YGLETSYLKVASDVIKRNEDERPLFSTAFFSLFVTSILFSALMLLFAPSIAVAIGLAPES HCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEECCCCC GVFIRYAAAILFLDTLLVVPFAELRLKRKAIPFALAKVMGVVGGVISTFVLILGLHAGLS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GVFIGEALGSVVSLLFILPVLKNLKPTFSPGMCRQLLGIGLPYVPTGIAGLLIHLIDRNL HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC LIRIPQQDIDRLYGAGFQASDITGIYGRVAAFGVALQMFIQIFRFAWQPFFLQHADDPEA EEECCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEECCCCCCC KPLFKQVMNLSGIAVIVLAVACTFFVPDLVRYHWGGKLYLLPPKYWMGMSILPWIFFSYV CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHH FDMISTNLSAGILITGKTKYLPVVTFAGAAVTTLGCWILIPLGGMDGAAVAILLGAAVMC HHHHHCCCCCCEEEECCCCEEEHEEECHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHH LCMGWYSVRFYPISYDWGRLSLLLGAGLAFAVWHDDLLVWLAGFGISGLLAMMVKLLIVL HHHHHHHEEEEEEECCHHHHHHHHHCCHHEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHH LYLVLGTLIFRNEASAVVKMVQRKLRPAGSSGSR HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA