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The map label for this gene is rbfA

Identifier: 21673081

GI number: 21673081

Start: 254879

End: 255241

Strand: Direct

Name: rbfA

Synonym: CT0242

Alternate gene names: 21673081

Gene position: 254879-255241 (Clockwise)

Preceding gene: 21673080

Following gene: 21673082

Centisome position: 11.83

GC content: 53.72

Gene sequence:

>363_bases
ATGTCAATACGTACCGATAAAGTCTCCTCGCTGTTGCAGCGGGAGTTGAGTGCTATTTTCGAAAAAGAGCTGCCAAGAAG
CGGCCCGCTGGTGACCGTGACCGAGGTGAGAATGACCGCCGATCTTGGTATCGCCAGGGTTTATGTGTCGGTGATCGGAT
CCGAGGCGCAACGAGCAGAGGTGATGGAGTATCTGGATGCCGAAAACAAGATGATCCGCAAGACGCTCTCTGCGAAAATT
CGCCACCAGTTCAGGCGGATTCCTGAGCTGGAGTTTTACGAAGATCGTCTGTTCGAGCAGGCCAACCGGATCGAGCAACT
GCTCAAATCGGTCAAGCCTGCCCGGGATGAAGAGCAGCATTAA

Upstream 100 bases:

>100_bases
CAGTCTCAAAGGGTATGACGATATCAAGGTGGGCGACGTGATCGAGGCCTACAAGATCGTCGAGAAAAAACGCAAGCTCT
GAGCTGAAAGGAGAGCCCTC

Downstream 100 bases:

>100_bases
CTCCGCATTGTTTGGAATCGGGATCACGATGATCGATCAAGGCCGCATATCCGTTCTGAGCGAAGAGGGCGACTATCTGC
TGGTGGACAAGCCGCTCGAC

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 119

Protein sequence:

>120_residues
MSIRTDKVSSLLQRELSAIFEKELPRSGPLVTVTEVRMTADLGIARVYVSVIGSEAQRAEVMEYLDAENKMIRKTLSAKI
RHQFRRIPELEFYEDRLFEQANRIEQLLKSVKPARDEEQH

Sequences:

>Translated_120_residues
MSIRTDKVSSLLQRELSAIFEKELPRSGPLVTVTEVRMTADLGIARVYVSVIGSEAQRAEVMEYLDAENKMIRKTLSAKI
RHQFRRIPELEFYEDRLFEQANRIEQLLKSVKPARDEEQH
>Mature_119_residues
SIRTDKVSSLLQRELSAIFEKELPRSGPLVTVTEVRMTADLGIARVYVSVIGSEAQRAEVMEYLDAENKMIRKTLSAKIR
HQFRRIPELEFYEDRLFEQANRIEQLLKSVKPARDEEQH

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_CHLTE (Q8KFT0)

Other databases:

- EMBL:   AE006470
- RefSeq:   NP_661146.1
- ProteinModelPortal:   Q8KFT0
- SMR:   Q8KFT0
- GeneID:   1007730
- GenomeReviews:   AE006470_GR
- KEGG:   cte:CT0242
- NMPDR:   fig|194439.1.peg.240
- TIGR:   CT0242
- HOGENOM:   HBG751055
- OMA:   QRIEMRR
- ProtClustDB:   CLSK637234
- BioCyc:   CTEP194439:CT_0242-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 13976; Mature: 13845

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIRTDKVSSLLQRELSAIFEKELPRSGPLVTVTEVRMTADLGIARVYVSVIGSEAQRAE
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHH
VMEYLDAENKMIRKTLSAKIRHQFRRIPELEFYEDRLFEQANRIEQLLKSVKPARDEEQH
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SIRTDKVSSLLQRELSAIFEKELPRSGPLVTVTEVRMTADLGIARVYVSVIGSEAQRAE
CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHH
VMEYLDAENKMIRKTLSAKIRHQFRRIPELEFYEDRLFEQANRIEQLLKSVKPARDEEQH
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901