Definition Chlorobium tepidum TLS, complete genome.
Accession NC_002932
Length 2,154,946

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The map label for this gene is uspF [C]

Identifier: 21672947

GI number: 21672947

Start: 100026

End: 100496

Strand: Reverse

Name: uspF [C]

Synonym: CT0106

Alternate gene names: 21672947

Gene position: 100496-100026 (Counterclockwise)

Preceding gene: 21672948

Following gene: 21672946

Centisome position: 4.66

GC content: 59.66

Gene sequence:

>471_bases
ATGACGACAAACCATGTAAAACCATCGAAAATTATGCTCTGCCCTGTCGATTTTTCGCCATCTTCCGAAAGGGCGCTGCT
TTATGCCGCCGAACACTGCCCGGCTGACGCCGAGCTGATCGTGCTGTATGTCGGCGACGCCGGAAACGGCGACCGGGGCA
CAATGCTCAGAGAGCATCTCCATCAGTTTTCGAGCTATTCCGACCTGCTCTCTGCCTACGGCTGCCGGGTGCGTTTCGCC
GTCGAGTACGGCTCGCCCGGCGCGACCATCATCGAATATGCGTCGAAAACCGGGGCAGCTATGATCGTGCTCGGCTCGCA
CGGCGCGAGCAATCTGGGGCGCCTGCTGGTTGGCAGCACTGCTGAATCGGTGATGCGCCACGCGCCGTGCCCGGTGCTGG
TGCTCCGCTCGCCGGAAGGCGTCAATGAAACCGGAACGGTTCAGCGGAAACAAAAAGAAGCAATCCTGTAA

Upstream 100 bases:

>100_bases
AGCTGGCGAACTTGCAGGCCCGATATGAATATGTGATGAATGCCTATTCGGTCAGACGCGCCGCTGGCGATCTGATCGAG
CGATAAACGGAGTGATAATC

Downstream 100 bases:

>100_bases
ACACCAACGACAGATTTACTATCCATGGCAGAAACGCAGCAATCCAACATCGAAGCACCGGACAACGAAAAAGGCAAGCC
AAAACCGGAACGCTCGATGG

Product: universal stress protein

Products: NA

Alternate protein names: UspA Domain Protein; Universal Stress Protein; Universal Stress Protein Family; UpsA Domain-Containing Protein; Universal Stress Protein Usp

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MTTNHVKPSKIMLCPVDFSPSSERALLYAAEHCPADAELIVLYVGDAGNGDRGTMLREHLHQFSSYSDLLSAYGCRVRFA
VEYGSPGATIIEYASKTGAAMIVLGSHGASNLGRLLVGSTAESVMRHAPCPVLVLRSPEGVNETGTVQRKQKEAIL

Sequences:

>Translated_156_residues
MTTNHVKPSKIMLCPVDFSPSSERALLYAAEHCPADAELIVLYVGDAGNGDRGTMLREHLHQFSSYSDLLSAYGCRVRFA
VEYGSPGATIIEYASKTGAAMIVLGSHGASNLGRLLVGSTAESVMRHAPCPVLVLRSPEGVNETGTVQRKQKEAIL
>Mature_155_residues
TTNHVKPSKIMLCPVDFSPSSERALLYAAEHCPADAELIVLYVGDAGNGDRGTMLREHLHQFSSYSDLLSAYGCRVRFAV
EYGSPGATIIEYASKTGAAMIVLGSHGASNLGRLLVGSTAESVMRHAPCPVLVLRSPEGVNETGTVQRKQKEAIL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 80 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16690; Mature: 16559

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTNHVKPSKIMLCPVDFSPSSERALLYAAEHCPADAELIVLYVGDAGNGDRGTMLREHL
CCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCHHHHHHHH
HQFSSYSDLLSAYGCRVRFAVEYGSPGATIIEYASKTGAAMIVLGSHGASNLGRLLVGST
HHHCCHHHHHHHCCCEEEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEECCC
AESVMRHAPCPVLVLRSPEGVNETGTVQRKQKEAIL
HHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHCCCC
>Mature Secondary Structure 
TTNHVKPSKIMLCPVDFSPSSERALLYAAEHCPADAELIVLYVGDAGNGDRGTMLREHL
CCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCHHHHHHHH
HQFSSYSDLLSAYGCRVRFAVEYGSPGATIIEYASKTGAAMIVLGSHGASNLGRLLVGST
HHHCCHHHHHHHCCCEEEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEECCC
AESVMRHAPCPVLVLRSPEGVNETGTVQRKQKEAIL
HHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA