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The map label for this gene is ybbD [H]

Identifier: 21672931

GI number: 21672931

Start: 85187

End: 86305

Strand: Direct

Name: ybbD [H]

Synonym: CT0090

Alternate gene names: 21672931

Gene position: 85187-86305 (Clockwise)

Preceding gene: 21672930

Following gene: 21672932

Centisome position: 3.95

GC content: 58.0

Gene sequence:

>1119_bases
ATGAAAGCGACTCTCCTTGCGGCGCTGCTGCTTTTTTTGAGCTTTACCTCCGCGCTGGCCGCGCCATCCACGCCCGACAG
TCTTTCGATCAAGATCGGCCAGATGCTTATGATCGGCTTCCGTGGCATGGAGGCCAAAGACGATTCAGCTATCGCCGCTG
ATATTCGCGAGCGGGGCATCGGCGGCGTGGTGCTGTTCGATTACGACGTGCCATCAAAATCTCCAATTCGCAACATCGAG
TCGCCGGAGCAGCTCCGGCGTCTTACCTCGGAGCTGCAAAAGCTCTCGACCACTCCGCTTTTCATTGCTGTCGATCAGGA
GGGTGGGCGCGTCTGCCGCCTCAAGCCGTCGCGCGGCTTTCCGCCGACCGTTTCCGCCGCTTATCTCGGCACACTCAATA
ATTCCGACAGCACATGGCAGGCCGCCGGATCGACCGCCGCTTTACTCAAAAGTCTCGGTATCAACGTGAATCTCGCGCCG
GTGGTTGATCTGAACGTCAACCCAAGCAATCCCGTCATCGGCAAGCTCGACCGGAGCTTCTCGGCAGATCCGGTTGTCGT
TGCCCAGCAGGCTCGAATGGTCATCGATGCGTTCCACCAGCAAGGCATCATTGCTGCGCTGAAGCACTTCCCCGGCCACG
GCAGCTCGACCACCGATACGCACAAGGATTTTACCGATGTCACCGCCACCTGGTCAAAAAAAGAGCTTGATCCCTACTGG
GCGCTGATCCGTGAAGGGTATAGCGATCCGGTCATGACAGCGCACGTTTTCAACGCCCGCCTCGACAGCCTCTACCCGGC
GACGCTCTCGAAGGCGACGATTGACGGCCTGCTTCGCAAACAGCTCGGCTTCCGGGGTGTGGTACTCAGCGACGACATGC
AGATGAAAGCTATCGCCGACCGTTATGGCCTCGAAGAGGCGATCCGGCTGGCGATTGACGCAGGGGTCGATGTGCTGATT
TTCGGCAACAACGTCAGCTACGACCCGGAGATCGCTAGCAAAGCAACGAGCATTATCCGCCACCTCGTTGAAAAAGGGGC
TATTTCGCCGGAGAGGATTAACGAATCGTACCGGCGGATCATGACCTTGAAAACCCGAACTATCATTTCTCGCCCATGA

Upstream 100 bases:

>100_bases
CGAGATCGGGCTGGAGAACGATGCCATCGTAATGAAGAAGAAATAACAACAAGCCTCGGGCTGGTCTTATCAAAAAAAGG
CCAGCCTGTTTTTTATTTCC

Downstream 100 bases:

>100_bases
AAACCCTCTACCTCGTACGCCACGCCAAGGCGGGCTGGAAAGATCCGGCCCAGTCCGACTTCGACCGCTCCCTCACCAAA
CAAGGCCGCCGCCAGGCCGA

Product: glycosy hydrolase family protein

Products: N-acetylglucosamin; anhydro-N-acetylmuramic acid [C]

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MKATLLAALLLFLSFTSALAAPSTPDSLSIKIGQMLMIGFRGMEAKDDSAIAADIRERGIGGVVLFDYDVPSKSPIRNIE
SPEQLRRLTSELQKLSTTPLFIAVDQEGGRVCRLKPSRGFPPTVSAAYLGTLNNSDSTWQAAGSTAALLKSLGINVNLAP
VVDLNVNPSNPVIGKLDRSFSADPVVVAQQARMVIDAFHQQGIIAALKHFPGHGSSTTDTHKDFTDVTATWSKKELDPYW
ALIREGYSDPVMTAHVFNARLDSLYPATLSKATIDGLLRKQLGFRGVVLSDDMQMKAIADRYGLEEAIRLAIDAGVDVLI
FGNNVSYDPEIASKATSIIRHLVEKGAISPERINESYRRIMTLKTRTIISRP

Sequences:

>Translated_372_residues
MKATLLAALLLFLSFTSALAAPSTPDSLSIKIGQMLMIGFRGMEAKDDSAIAADIRERGIGGVVLFDYDVPSKSPIRNIE
SPEQLRRLTSELQKLSTTPLFIAVDQEGGRVCRLKPSRGFPPTVSAAYLGTLNNSDSTWQAAGSTAALLKSLGINVNLAP
VVDLNVNPSNPVIGKLDRSFSADPVVVAQQARMVIDAFHQQGIIAALKHFPGHGSSTTDTHKDFTDVTATWSKKELDPYW
ALIREGYSDPVMTAHVFNARLDSLYPATLSKATIDGLLRKQLGFRGVVLSDDMQMKAIADRYGLEEAIRLAIDAGVDVLI
FGNNVSYDPEIASKATSIIRHLVEKGAISPERINESYRRIMTLKTRTIISRP
>Mature_372_residues
MKATLLAALLLFLSFTSALAAPSTPDSLSIKIGQMLMIGFRGMEAKDDSAIAADIRERGIGGVVLFDYDVPSKSPIRNIE
SPEQLRRLTSELQKLSTTPLFIAVDQEGGRVCRLKPSRGFPPTVSAAYLGTLNNSDSTWQAAGSTAALLKSLGINVNLAP
VVDLNVNPSNPVIGKLDRSFSADPVVVAQQARMVIDAFHQQGIIAALKHFPGHGSSTTDTHKDFTDVTATWSKKELDPYW
ALIREGYSDPVMTAHVFNARLDSLYPATLSKATIDGLLRKQLGFRGVVLSDDMQMKAIADRYGLEEAIRLAIDAGVDVLI
FGNNVSYDPEIASKATSIIRHLVEKGAISPERINESYRRIMTLKTRTIISRP

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=310, Percent_Identity=33.5483870967742, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1788453, Length=351, Percent_Identity=23.0769230769231, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: NA

Molecular weight: Translated: 40438; Mature: 40438

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKATLLAALLLFLSFTSALAAPSTPDSLSIKIGQMLMIGFRGMEAKDDSAIAADIRERGI
CCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEECCCCCCCCCCHHHHHHHHCCC
GGVVLFDYDVPSKSPIRNIESPEQLRRLTSELQKLSTTPLFIAVDQEGGRVCRLKPSRGF
CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCCC
PPTVSAAYLGTLNNSDSTWQAAGSTAALLKSLGINVNLAPVVDLNVNPSNPVIGKLDRSF
CCCCCHHEEEECCCCCCCHHHCCHHHHHHHHHCCCEEEEEEEEEECCCCCCCEECCCCCC
SADPVVVAQQARMVIDAFHQQGIIAALKHFPGHGSSTTDTHKDFTDVTATWSKKELDPYW
CCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHH
ALIREGYSDPVMTAHVFNARLDSLYPATLSKATIDGLLRKQLGFRGVVLSDDMQMKAIAD
HHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHH
RYGLEEAIRLAIDAGVDVLIFGNNVSYDPEIASKATSIIRHLVEKGAISPERINESYRRI
HHCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
MTLKTRTIISRP
HHHHHHHHCCCC
>Mature Secondary Structure
MKATLLAALLLFLSFTSALAAPSTPDSLSIKIGQMLMIGFRGMEAKDDSAIAADIRERGI
CCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEECCCCCCCCCCHHHHHHHHCCC
GGVVLFDYDVPSKSPIRNIESPEQLRRLTSELQKLSTTPLFIAVDQEGGRVCRLKPSRGF
CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCCC
PPTVSAAYLGTLNNSDSTWQAAGSTAALLKSLGINVNLAPVVDLNVNPSNPVIGKLDRSF
CCCCCHHEEEECCCCCCCHHHCCHHHHHHHHHCCCEEEEEEEEEECCCCCCCEECCCCCC
SADPVVVAQQARMVIDAFHQQGIIAALKHFPGHGSSTTDTHKDFTDVTATWSKKELDPYW
CCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHH
ALIREGYSDPVMTAHVFNARLDSLYPATLSKATIDGLLRKQLGFRGVVLSDDMQMKAIAD
HHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHH
RYGLEEAIRLAIDAGVDVLIFGNNVSYDPEIASKATSIIRHLVEKGAISPERINESYRRI
HHCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
MTLKTRTIISRP
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Cell Wall [C]

Specific reaction: Cell Wall = N-acetylglucosamin + anhydro-N-acetylmuramic acid [C]

General reaction: Hydrolyse [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]