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The map label for this gene is nifU

Identifier: 21672834

GI number: 21672834

Start: 635863

End: 636249

Strand: Direct

Name: nifU

Synonym: BUsg578

Alternate gene names: 21672834

Gene position: 635863-636249 (Clockwise)

Preceding gene: 21672833

Following gene: 21672835

Centisome position: 99.13

GC content: 31.78

Gene sequence:

>387_bases
ATGGCTTATAGCAAAAAAGTTATGGATCATTATGAAAATCCACGTAATGTTGGTTCCTTTTCTAATTCTGATTCTAATGT
AGGAAGTGGATTGGTAGGTGCACCTGCTTGTGGTGATGTGATGAAATTACAAATTAAAGTTAATGAACAAGGTATTATTG
AAGATGCTTGCTTTAAAACGTATGGTTGTGGTTCTGCAATAGCCTCTAGTTCTTTGGTTACAGAATGGATTAAGGGTAAA
TCTATAACGGAAGCAGAAGCAATTAAAAATACTAGTATAGTTGAAGAACTAGAATTGCCACCAGTAAAAATACATTGTTC
TATTTTAGCAGAGGATGCTATTAAAGCTGCTATTTCAGATTATAAAAGTAAGAAAAATAAAAATTAA

Upstream 100 bases:

>100_bases
CTTTGTGGGAAATGTTTAAATCAGGAGTTGATTTAAATAGTATAGAATGGGATCATACCTAAAGTAAGAGAATCAAATAT
ATATTAAGAAGGTAGTTAAA

Downstream 100 bases:

>100_bases
TTTTTATTTTTTTAGTTAAAATGTTGAAAGAGATTATCCTTTCAACATTTAATTATGAATTTTAGTATTTTTTAAATATA
TTTTGAATTAGGTGACTTAT

Product: scaffold protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MAYSKKVMDHYENPRNVGSFSNSDSNVGSGLVGAPACGDVMKLQIKVNEQGIIEDACFKTYGCGSAIASSSLVTEWIKGK
SITEAEAIKNTSIVEELELPPVKIHCSILAEDAIKAAISDYKSKKNKN

Sequences:

>Translated_128_residues
MAYSKKVMDHYENPRNVGSFSNSDSNVGSGLVGAPACGDVMKLQIKVNEQGIIEDACFKTYGCGSAIASSSLVTEWIKGK
SITEAEAIKNTSIVEELELPPVKIHCSILAEDAIKAAISDYKSKKNKN
>Mature_127_residues
AYSKKVMDHYENPRNVGSFSNSDSNVGSGLVGAPACGDVMKLQIKVNEQGIIEDACFKTYGCGSAIASSSLVTEWIKGKS
ITEAEAIKNTSIVEELELPPVKIHCSILAEDAIKAAISDYKSKKNKN

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential)

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family

Homologues:

Organism=Homo sapiens, GI56699456, Length=123, Percent_Identity=73.1707317073171, Blast_Score=194, Evalue=1e-50,
Organism=Homo sapiens, GI24307953, Length=123, Percent_Identity=71.5447154471545, Blast_Score=189, Evalue=7e-49,
Organism=Escherichia coli, GI1788878, Length=125, Percent_Identity=86.4, Blast_Score=229, Evalue=4e-62,
Organism=Caenorhabditis elegans, GI17543474, Length=125, Percent_Identity=66.4, Blast_Score=179, Evalue=3e-46,
Organism=Saccharomyces cerevisiae, GI6324800, Length=125, Percent_Identity=68.8, Blast_Score=181, Evalue=3e-47,
Organism=Saccharomyces cerevisiae, GI6325122, Length=125, Percent_Identity=67.2, Blast_Score=180, Evalue=6e-47,
Organism=Drosophila melanogaster, GI21355597, Length=125, Percent_Identity=72, Blast_Score=192, Evalue=5e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NIFU_BUCAP (O51885)

Other databases:

- EMBL:   AF008210
- EMBL:   AE013218
- RefSeq:   NP_660901.1
- ProteinModelPortal:   O51885
- SMR:   O51885
- EnsemblBacteria:   EBBUCT00000000061
- GeneID:   1005593
- GenomeReviews:   AE013218_GR
- KEGG:   bas:BUsg578
- GeneTree:   EBGT00050000007820
- HOGENOM:   HBG584215
- OMA:   FTNPRNV
- ProtClustDB:   PRK11325
- BioCyc:   BAPH198804:BUSG578-MONOMER
- InterPro:   IPR011339
- InterPro:   IPR002871
- PANTHER:   PTHR10093
- TIGRFAMs:   TIGR01999

Pfam domain/function: PF01592 NifU_N

EC number: NA

Molecular weight: Translated: 13728; Mature: 13597

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYSKKVMDHYENPRNVGSFSNSDSNVGSGLVGAPACGDVMKLQIKVNEQGIIEDACFKT
CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHH
YGCGSAIASSSLVTEWIKGKSITEAEAIKNTSIVEELELPPVKIHCSILAEDAIKAAISD
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHCHHHHHHHCCCCEEEEHHHHHHHHHHHHHHH
YKSKKNKN
HHHHCCCC
>Mature Secondary Structure 
AYSKKVMDHYENPRNVGSFSNSDSNVGSGLVGAPACGDVMKLQIKVNEQGIIEDACFKT
CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHH
YGCGSAIASSSLVTEWIKGKSITEAEAIKNTSIVEELELPPVKIHCSILAEDAIKAAISD
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHCHHHHHHHCCCCEEEEHHHHHHHHHHHHHHH
YKSKKNKN
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9516544; 12089438