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The map label for this gene is ybeD [C]

Identifier: 21672737

GI number: 21672737

Start: 539292

End: 539555

Strand: Direct

Name: ybeD [C]

Synonym: BUsg472

Alternate gene names: 21672737

Gene position: 539292-539555 (Clockwise)

Preceding gene: 21672735

Following gene: 21672742

Centisome position: 84.07

GC content: 28.03

Gene sequence:

>264_bases
ATGAAGACAAAATTACGAGAAATGTTAAAATTCCCTTGTTTTTTTACTTATAAGATCATTGGTTTAGCACAACCCGAACT
TGTTGATCAAATAATAAAAGTCATTCAAATTCAGATTCCTGGAGATTATACACCTCAAGTAAAATCAAGTAACAGAGGTA
ATTATCTTTCTGTTTCCATTACAATATGTGCAAAAAATTTTGAACAGATTGAAACATTGTACCATGATATTAGTAAAATA
AATATGGTGAGAATGGTTCTATAA

Upstream 100 bases:

>100_bases
TATAAAAAATTTTAAATGATATGTTTATATAAAAATATAACAAATTAATTAATTTTTTTTAAATTAAAAAATTCATTAAA
AATAACACCAGGATTAATTA

Downstream 100 bases:

>100_bases
AAAATATAAGATCCTAAATAGTACAGCTCGATAAAGAGCCGTACTAAAAAAGATTTTTATTTTTTATTTAAAAAAAAATC
TATAGACTAATAACATTAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 87; Mature: 87

Protein sequence:

>87_residues
MKTKLREMLKFPCFFTYKIIGLAQPELVDQIIKVIQIQIPGDYTPQVKSSNRGNYLSVSITICAKNFEQIETLYHDISKI
NMVRMVL

Sequences:

>Translated_87_residues
MKTKLREMLKFPCFFTYKIIGLAQPELVDQIIKVIQIQIPGDYTPQVKSSNRGNYLSVSITICAKNFEQIETLYHDISKI
NMVRMVL
>Mature_87_residues
MKTKLREMLKFPCFFTYKIIGLAQPELVDQIIKVIQIQIPGDYTPQVKSSNRGNYLSVSITICAKNFEQIETLYHDISKI
NMVRMVL

Specific function: Unknown

COG id: COG2921

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0250 family

Homologues:

Organism=Escherichia coli, GI1786850, Length=87, Percent_Identity=63.2183908045977, Blast_Score=120, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y472_BUCAP (Q8K978)

Other databases:

- EMBL:   AE013218
- RefSeq:   NP_660804.1
- ProteinModelPortal:   Q8K978
- SMR:   Q8K978
- EnsemblBacteria:   EBBUCT00000000379
- GeneID:   1005695
- GenomeReviews:   AE013218_GR
- KEGG:   bas:BUsg472
- GeneTree:   EBGT00050000007878
- HOGENOM:   HBG297220
- OMA:   TSKEHIE
- ProtClustDB:   PRK04998
- BioCyc:   BAPH198804:BUSG472-MONOMER
- HAMAP:   MF_00659
- InterPro:   IPR007454

Pfam domain/function: PF04359 DUF493

EC number: NA

Molecular weight: Translated: 10096; Mature: 10096

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTKLREMLKFPCFFTYKIIGLAQPELVDQIIKVIQIQIPGDYTPQVKSSNRGNYLSVSI
CCHHHHHHHHCCCCEEHHEECCCCHHHHHHHHHHEEEECCCCCCCCCCCCCCCCEEEEEE
TICAKNFEQIETLYHDISKINMVRMVL
EEECCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKTKLREMLKFPCFFTYKIIGLAQPELVDQIIKVIQIQIPGDYTPQVKSSNRGNYLSVSI
CCHHHHHHHHCCCCEEHHEECCCCHHHHHHHHHHEEEECCCCCCCCCCCCCCCCEEEEEE
TICAKNFEQIETLYHDISKINMVRMVL
EEECCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12089438