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The map label for this gene is ribD1

Identifier: 21672710

GI number: 21672710

Start: 508202

End: 508645

Strand: Direct

Name: ribD1

Synonym: BUsg445

Alternate gene names: 21672710

Gene position: 508202-508645 (Clockwise)

Preceding gene: 21672709

Following gene: 21672711

Centisome position: 79.23

GC content: 30.63

Gene sequence:

>444_bases
ATGAAAGATAGATTTTATATGACAAGAGCAATAAAACTTAGTAAATTAGGAGAATTTACAACTTCTCCAAATCCTAATGT
AGGATGTGTAATAGTACAAAATAAAAAAATTGTAGGAGAAGGTTGGCATAAAAAATATGGAGAAAATCATGCTGAAATTA
ATGCTTTAAACATGGCAGGAGAAAAAGCAAAAGGATCCACTGCTTATATAACACTTGAACCATGTAACCATTTTGGAAAA
ACTCCTCCATGTTGTGATGCAATCATACAATCCGGGATAAAAAATGTAATAATATCTAGTTTAGATCCTAATCCCAAAGT
TTCTGGAAAAGGGGTGTTATATCTTAGAAAAAAAGGTATCAGCGTAAAAATAGGTCTCATGTCAAAAGAATCTCAAAAAT
ATAACAAAGGATTTTTTAAGAGAATGAGAACAGGATTACCATGA

Upstream 100 bases:

>100_bases
CAGAAAAGGGATTGAATTTGATACAAAATCAAAAAAAAATAATTTTTAAAAAATCAGGTTTTAATCATTTTATTTAATAA
ATATGAAAAATTGGTGAAAT

Downstream 100 bases:

>100_bases
ATACGACTAAAATTAGCAATGTCGATAGATGGAAGAATAGCTATGAAAAATGGAGAAAGTCGATGGATTACTTCAAAAGA
ATCACGTGAAGATGTGCAAA

Product: riboflavin biosynthesis protein RibD

Products: NA

Alternate protein names: DRAP deaminase; Riboflavin-specific deaminase

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MKDRFYMTRAIKLSKLGEFTTSPNPNVGCVIVQNKKIVGEGWHKKYGENHAEINALNMAGEKAKGSTAYITLEPCNHFGK
TPPCCDAIIQSGIKNVIISSLDPNPKVSGKGVLYLRKKGISVKIGLMSKESQKYNKGFFKRMRTGLP

Sequences:

>Translated_147_residues
MKDRFYMTRAIKLSKLGEFTTSPNPNVGCVIVQNKKIVGEGWHKKYGENHAEINALNMAGEKAKGSTAYITLEPCNHFGK
TPPCCDAIIQSGIKNVIISSLDPNPKVSGKGVLYLRKKGISVKIGLMSKESQKYNKGFFKRMRTGLP
>Mature_147_residues
MKDRFYMTRAIKLSKLGEFTTSPNPNVGCVIVQNKKIVGEGWHKKYGENHAEINALNMAGEKAKGSTAYITLEPCNHFGK
TPPCCDAIIQSGIKNVIISSLDPNPKVSGKGVLYLRKKGISVKIGLMSKESQKYNKGFFKRMRTGLP

Specific function: Converts 2,5-Diamino-6-(Ribosylamino)-4(3h)-Pyrimidinone 5'-Phosphate Into 5-Amino-6-(Ribosylamino)-2,4(1h,3h)- Pyrimidinedione 5'-Phosphate. [C]

COG id: COG0117

COG function: function code H; Pyrimidine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytidine and deoxycytidylate deaminase family

Homologues:

Organism=Escherichia coli, GI1786616, Length=147, Percent_Identity=61.2244897959184, Blast_Score=213, Evalue=3e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIBD1_BUCAP (Q8K9A4)

Other databases:

- EMBL:   AE013218
- RefSeq:   NP_660777.1
- ProteinModelPortal:   Q8K9A4
- SMR:   Q8K9A4
- EnsemblBacteria:   EBBUCT00000000130
- GeneID:   1005719
- GenomeReviews:   AE013218_GR
- KEGG:   bas:BUsg445
- GeneTree:   EBGT00050000007900
- HOGENOM:   HBG741046
- OMA:   LEPCSFV
- ProtClustDB:   CLSK538362
- BioCyc:   BAPH198804:BUSG445-MONOMER
- InterPro:   IPR016192
- InterPro:   IPR002125
- InterPro:   IPR016193
- InterPro:   IPR004794
- PANTHER:   PTHR11079:SF10
- TIGRFAMs:   TIGR00326

Pfam domain/function: PF00383 dCMP_cyt_deam_1; SSF53927 Cytidine_deaminase-like

EC number: =3.5.4.26

Molecular weight: Translated: 16233; Mature: 16233

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: PS00903 CYT_DCMP_DEAMINASES

Important sites: ACT_SITE 52-52

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDRFYMTRAIKLSKLGEFTTSPNPNVGCVIVQNKKIVGEGWHKKYGENHAEINALNMAG
CCCCEEHHHHHHHHHCCCCCCCCCCCEEEEEEECCEEECCCCHHHCCCCCCEEEEEECCC
EKAKGSTAYITLEPCNHFGKTPPCCDAIIQSGIKNVIISSLDPNPKVSGKGVLYLRKKGI
CCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCC
SVKIGLMSKESQKYNKGFFKRMRTGLP
EEEEEECCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKDRFYMTRAIKLSKLGEFTTSPNPNVGCVIVQNKKIVGEGWHKKYGENHAEINALNMAG
CCCCEEHHHHHHHHHCCCCCCCCCCCEEEEEEECCEEECCCCHHHCCCCCCEEEEEECCC
EKAKGSTAYITLEPCNHFGKTPPCCDAIIQSGIKNVIISSLDPNPKVSGKGVLYLRKKGI
CCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCC
SVKIGLMSKESQKYNKGFFKRMRTGLP
EEEEEECCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12089438