| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is ispE [H]
Identifier: 213693331
GI number: 213693331
Start: 2814653
End: 2815603
Strand: Direct
Name: ispE [H]
Synonym: Blon_2485
Alternate gene names: 213693331
Gene position: 2814653-2815603 (Clockwise)
Preceding gene: 213693330
Following gene: 213693332
Centisome position: 99.36
GC content: 62.99
Gene sequence:
>951_bases ATGAGTCCGGTAATTTCACATCCACGCCCAGCCGCTGCCCGACATCAGTTCGATGAGCTCTCCCCCATCACCATTACGGT GGATTGCCCGGCTAAAACCAATCTCACCTTGGAAGTGGGGCCTGCTCACGACGAGTGGGGCGGACGCCACGAACTGGACA CCATCTACTGTGCAATCGGTGTATACGACACCGTCACCGCAACCGCCAAGCAACCCGGAGCGGGATTCTCTCTGGAGCTC GAAGGCGCTTATTTGGGCGACTTGGCCTCCTCACGCAGCGACATGCGCCGCAACCATGCGGTACTGGCCCTCTTCGCCAT GGCCCAGGCGGCCGAACGCGAGCCGGATGTGGCGTTGACCATTACCAAGCGCATTCCCGTGGGTGCCGGACTAGGCGGCG GTTCAGCCGACGCCGCGGCGACCATGCTGGCGGTCAATCGTCTCTGGGAGCTGAACTGGCCTATAGAGCGCCTGCGCACC ATTGCCGCCACGTTGGGCGCGGACATGCCGTTCTGCCTGACCGGTGGCCTTGCATACGGCACCGGTTTCGGCGAACGCAT CACGGATATCGCCCCCGGCAGCCGCGATGAGCTGGCGCTGATAGAACAGGGATTCAGCGGCGAAGTATTGGTCGGCGCGT ACCAGTCGCAACTCAGCACTCCTGAGGTCTACCACACCTTTGACCTCGTGGGAGCCGCAGAAGGCGACCGCAATCATCTG CAGGCTGCGGCAATCAGCCTGCATCCCCGCAGCGGGCAGGCCATCGACGCCGCCACGCAGGCGGGTGCCAGCCATGCATT CGTCTCCGGATCCGGCCCCTCAGTGGTCGCTTTCGCCGCCGACGAGGCAGCGGCACAACGCATTATCGATGTGTGGCGCG ATACGGCTGTGGTCGATCGCATTATTCGAGCCAAATCTCCCGCACACCCCAATATCGGCGTCAGACAGTGA
Upstream 100 bases:
>100_bases CCGGCATCGATCCGACCCGTCGAGGAGAGACGCTCACCATCGCCGAATTCACCGCTCTGGCCAAGGCCATCGAATCGTGT GGAGATGGAGATGAGGCACA
Downstream 100 bases:
>100_bases CGCTAAGGTAGCAACCAGCCACCCGACCCATGAAAGAAGTCCACCGATGACGTATCAGGTTGATGAACGTGAAGCCCGCA AGGCGTACGTGCGCCGCCGC
Product: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
Products: NA
Alternate protein names: CMK; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase [H]
Number of amino acids: Translated: 316; Mature: 315
Protein sequence:
>316_residues MSPVISHPRPAAARHQFDELSPITITVDCPAKTNLTLEVGPAHDEWGGRHELDTIYCAIGVYDTVTATAKQPGAGFSLEL EGAYLGDLASSRSDMRRNHAVLALFAMAQAAEREPDVALTITKRIPVGAGLGGGSADAAATMLAVNRLWELNWPIERLRT IAATLGADMPFCLTGGLAYGTGFGERITDIAPGSRDELALIEQGFSGEVLVGAYQSQLSTPEVYHTFDLVGAAEGDRNHL QAAAISLHPRSGQAIDAATQAGASHAFVSGSGPSVVAFAADEAAAQRIIDVWRDTAVVDRIIRAKSPAHPNIGVRQ
Sequences:
>Translated_316_residues MSPVISHPRPAAARHQFDELSPITITVDCPAKTNLTLEVGPAHDEWGGRHELDTIYCAIGVYDTVTATAKQPGAGFSLEL EGAYLGDLASSRSDMRRNHAVLALFAMAQAAEREPDVALTITKRIPVGAGLGGGSADAAATMLAVNRLWELNWPIERLRT IAATLGADMPFCLTGGLAYGTGFGERITDIAPGSRDELALIEQGFSGEVLVGAYQSQLSTPEVYHTFDLVGAAEGDRNHL QAAAISLHPRSGQAIDAATQAGASHAFVSGSGPSVVAFAADEAAAQRIIDVWRDTAVVDRIIRAKSPAHPNIGVRQ >Mature_315_residues SPVISHPRPAAARHQFDELSPITITVDCPAKTNLTLEVGPAHDEWGGRHELDTIYCAIGVYDTVTATAKQPGAGFSLELE GAYLGDLASSRSDMRRNHAVLALFAMAQAAEREPDVALTITKRIPVGAGLGGGSADAAATMLAVNRLWELNWPIERLRTI AATLGADMPFCLTGGLAYGTGFGERITDIAPGSRDELALIEQGFSGEVLVGAYQSQLSTPEVYHTFDLVGAAEGDRNHLQ AAAISLHPRSGQAIDAATQAGASHAFVSGSGPSVVAFAADEAAAQRIIDVWRDTAVVDRIIRAKSPAHPNIGVRQ
Specific function: Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol [H]
COG id: COG1947
COG function: function code I; 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GHMP kinase family. IspE subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006204 - InterPro: IPR013750 - InterPro: IPR004424 - InterPro: IPR020568 - InterPro: IPR014721 [H]
Pfam domain/function: PF08544 GHMP_kinases_C; PF00288 GHMP_kinases_N [H]
EC number: =2.7.1.148 [H]
Molecular weight: Translated: 33255; Mature: 33124
Theoretical pI: Translated: 5.15; Mature: 5.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPVISHPRPAAARHQFDELSPITITVDCPAKTNLTLEVGPAHDEWGGRHELDTIYCAIG CCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCEEEEEEE VYDTVTATAKQPGAGFSLELEGAYLGDLASSRSDMRRNHAVLALFAMAQAAEREPDVALT CHHHHEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE ITKRIPVGAGLGGGSADAAATMLAVNRLWELNWPIERLRTIAATLGADMPFCLTGGLAYG EEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHCCCCCCC TGFGERITDIAPGSRDELALIEQGFSGEVLVGAYQSQLSTPEVYHTFDLVGAAEGDRNHL CCCCHHHHHCCCCCCCCCHHHHCCCCCCEEEEEHHHHCCCCHHEEEEEEEECCCCCCHHE QAAAISLHPRSGQAIDAATQAGASHAFVSGSGPSVVAFAADEAAAQRIIDVWRDTAVVDR EEEEEEECCCCCCEEHHHHHCCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHH IIRAKSPAHPNIGVRQ HHHHCCCCCCCCCCCC >Mature Secondary Structure SPVISHPRPAAARHQFDELSPITITVDCPAKTNLTLEVGPAHDEWGGRHELDTIYCAIG CCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCEEEEEEE VYDTVTATAKQPGAGFSLELEGAYLGDLASSRSDMRRNHAVLALFAMAQAAEREPDVALT CHHHHEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE ITKRIPVGAGLGGGSADAAATMLAVNRLWELNWPIERLRTIAATLGADMPFCLTGGLAYG EEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHCCCCCCC TGFGERITDIAPGSRDELALIEQGFSGEVLVGAYQSQLSTPEVYHTFDLVGAAEGDRNHL CCCCHHHHHCCCCCCCCCHHHHCCCCCCEEEEEHHHHCCCCHHEEEEEEEECCCCCCHHE QAAAISLHPRSGQAIDAATQAGASHAFVSGSGPSVVAFAADEAAAQRIIDVWRDTAVVDR EEEEEEECCCCCCEEHHHHHCCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHH IIRAKSPAHPNIGVRQ HHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA