Click here to switch to the map view.

The map label for this gene is rlmH [H]

Identifier: 213693214

GI number: 213693214

Start: 2638287

End: 2638766

Strand: Direct

Name: rlmH [H]

Synonym: Blon_2364

Alternate gene names: 213693214

Gene position: 2638287-2638766 (Clockwise)

Preceding gene: 213693213

Following gene: 213693221

Centisome position: 93.14

GC content: 55.21

Gene sequence:

>480_bases
ATGAACATCGACATCGTCTGCGTCGGCCGGATCAAGGAACGGTATCTGACCGACGCCATCGCCGAATATTCCAAGCGGCT
CTCGCGCTACTGCAAGCTCAACATCATCGAGGTGGCGGATGAGAAGACGCCCGAACACGCCTCTGAAGGCGTTGGCCGAC
AGATCAAGGCCAAAGAAGGCGAACGCATCGCCAAGCATCTGAAGGACGGGGCGTTTGTTATTGCCCTTGCCATCAACGGC
AAGCAGCTGTCCAGTGAAGAATTGGCCGCCAAAATCAACGACCTTGGATTGCGTGGTACCAGCCATATTCAGCTGGTCAT
CGGCGGTTCAATCGGCCTTGACGACGCGATTCTGCGTCGTGCTGATTTTCTGCTGAGCTTCTCGAAGATGACGTTCCCGC
ATCAGCTCATGCGCGTGATTCTGTTGGAGCAGATCTATCGCGCGTACAAAATCAACGCCCACGAGCCGTATCACAAGTGA

Upstream 100 bases:

>100_bases
CGTGGTGTGCGCGGTGGACGAGAAGCTCAACGACAAGTGCTACATCGTGCCGGGTCTGGGCGATGCCGGCGATCGTCTCT
ACGGCGTCATCGACTGACAC

Downstream 100 bases:

>100_bases
AACACCATGCCTCATGGGGCGGGAAATCCCTCATGGGGCGGTAATTGCCCCATGGGGCCGTAAAACCCTCATGGGGCGGT
ATACCAAAATGGCTTAATTC

Product: rRNA large subunit methyltransferase

Products: NA

Alternate protein names: 23S rRNA m3Psi1915 methyltransferase; rRNA (pseudouridine-N3-)-methyltransferase rlmH [H]

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MNIDIVCVGRIKERYLTDAIAEYSKRLSRYCKLNIIEVADEKTPEHASEGVGRQIKAKEGERIAKHLKDGAFVIALAING
KQLSSEELAAKINDLGLRGTSHIQLVIGGSIGLDDAILRRADFLLSFSKMTFPHQLMRVILLEQIYRAYKINAHEPYHK

Sequences:

>Translated_159_residues
MNIDIVCVGRIKERYLTDAIAEYSKRLSRYCKLNIIEVADEKTPEHASEGVGRQIKAKEGERIAKHLKDGAFVIALAING
KQLSSEELAAKINDLGLRGTSHIQLVIGGSIGLDDAILRRADFLLSFSKMTFPHQLMRVILLEQIYRAYKINAHEPYHK
>Mature_159_residues
MNIDIVCVGRIKERYLTDAIAEYSKRLSRYCKLNIIEVADEKTPEHASEGVGRQIKAKEGERIAKHLKDGAFVIALAING
KQLSSEELAAKINDLGLRGTSHIQLVIGGSIGLDDAILRRADFLLSFSKMTFPHQLMRVILLEQIYRAYKINAHEPYHK

Specific function: Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA [H]

COG id: COG1576

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase rlmH family [H]

Homologues:

Organism=Escherichia coli, GI1786855, Length=159, Percent_Identity=30.8176100628931, Blast_Score=80, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016051
- InterPro:   IPR003742 [H]

Pfam domain/function: PF02590 SPOUT_MTase [H]

EC number: NA

Molecular weight: Translated: 17902; Mature: 17902

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIDIVCVGRIKERYLTDAIAEYSKRLSRYCKLNIIEVADEKTPEHASEGVGRQIKAKEG
CCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHCCCCCCCCCHH
ERIAKHLKDGAFVIALAINGKQLSSEELAAKINDLGLRGTSHIQLVIGGSIGLDDAILRR
HHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHH
ADFLLSFSKMTFPHQLMRVILLEQIYRAYKINAHEPYHK
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNIDIVCVGRIKERYLTDAIAEYSKRLSRYCKLNIIEVADEKTPEHASEGVGRQIKAKEG
CCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHCCCCCCCCCHH
ERIAKHLKDGAFVIALAINGKQLSSEELAAKINDLGLRGTSHIQLVIGGSIGLDDAILRR
HHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHH
ADFLLSFSKMTFPHQLMRVILLEQIYRAYKINAHEPYHK
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA