| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is serC [H]
Identifier: 213693001
GI number: 213693001
Start: 2373711
End: 2374853
Strand: Direct
Name: serC [H]
Synonym: Blon_2148
Alternate gene names: 213693001
Gene position: 2373711-2374853 (Clockwise)
Preceding gene: 213692996
Following gene: 213693002
Centisome position: 83.8
GC content: 63.52
Gene sequence:
>1143_bases ATGACTATCACACTGAGTATTCCCGAGTCGCTGAAGCCCGAAGATGGTCGTTTCGGCTCCGGTCCCAGCAAAATCCGCCC CGAACAGATCGCCGCGCTCGATGCCGGCGCCACCACCCTGCTTGGCACATCACATCGCCAGGCACCAGTCAAGCAACTGG TCGCTTCGATTCGTGAAGGTCTGCGCGAGTTCTTCCACCTGTCTGAAGGGTATGAGGTGGCGCTTGGCAACGGTGGCGCC AGCGCGTTCTGGGAGATTGCCTGCGCTTCGCTGATCACCCGTCGCGCCGCCTTCGGCACGTATGGCTCGTTCAGTGCCAA GTTCGCCGCGTCCGCCGCGAACGCACCCTTCCTTGAAGACCCGGTGCTGTTCCCCGGCGAGCCGGGCACTTACCGTCTGC CTGAGCTCACCGAGGGCGTGGACACATATTGCTGGGCTCACAACGAGACCTCCACTGGTGTGGCCGCCCCGATTCGCCGC GTGGCCGGAAGTCGTGAAGCCGGTGCCTTGACCGTCATCGACGGCACCAGCGCAGCCGGCGCTTTGCCTGTGGACATCAG CCAGACCGACGTCTACTACTTCTCACCGCAGAAGGCCTTCGGTGCCGATGGCGGTCTGTGGGTCGCCATCCTCTCCCCCG AAGCTATCGATCGTGCGGCAGGCGTCGAATCAAGCGCTCATCTGGAAGGCGCACATCGCTGGGTGCCGCCGTTCCTCTCG CTGACCACGGCACTGAACAACTCCCGCAAGGATCAGACCCTGAATACGCCCGCCGTGGCCACCCTGATCATGATGGAAAA CCAGATTCGCTGGCTCAACAACAACGGCGGCCTCGCCTGGGCCACCACGCGTTGCGCCAAGTCCGCATCCATCCTGTACT CGTGGGCCGAGCGCTCCGAATACGCCGCTCCGTTCGTCGTCGATACGGACTCCCGCTCGAACGCCGTGGTCACCATTGAT CTGGACGAGCGCGTCCAGGCCTCCCAGATACTGTCCATCCTGCGCGAGAACGGCATCGTGGACGCCGCCGGCTACCGCAA GCTGGGCCGCAATCAGCTGCGCGTTGGCGTGTTCCCCTCGGTGGAGCCGGCTGATGTCATGGCCTTTACCAAGTGCGTCG ACTATGTGGTCGAGCACCTGTGA
Upstream 100 bases:
>100_bases CTGCCGCCCGGCACCCCGGAATTCCGCAGTAGCCCCGCAGTAATCCCGCACACCGAGCATTATCCGCGATATTCCCCAAC ACTGGTCTACCCTTGAAACC
Downstream 100 bases:
>100_bases TGGAGGTCTATGCCTCGTATGGCCGACCATATATGCCATGCACATTGATCGGTCTCAACTGATACCGATTGAATAAATCG TAGGGAGGGATGTTTGACGC
Product: phosphoserine aminotransferase
Products: NA
Alternate protein names: Phosphohydroxythreonine aminotransferase; PSAT [H]
Number of amino acids: Translated: 380; Mature: 379
Protein sequence:
>380_residues MTITLSIPESLKPEDGRFGSGPSKIRPEQIAALDAGATTLLGTSHRQAPVKQLVASIREGLREFFHLSEGYEVALGNGGA SAFWEIACASLITRRAAFGTYGSFSAKFAASAANAPFLEDPVLFPGEPGTYRLPELTEGVDTYCWAHNETSTGVAAPIRR VAGSREAGALTVIDGTSAAGALPVDISQTDVYYFSPQKAFGADGGLWVAILSPEAIDRAAGVESSAHLEGAHRWVPPFLS LTTALNNSRKDQTLNTPAVATLIMMENQIRWLNNNGGLAWATTRCAKSASILYSWAERSEYAAPFVVDTDSRSNAVVTID LDERVQASQILSILRENGIVDAAGYRKLGRNQLRVGVFPSVEPADVMAFTKCVDYVVEHL
Sequences:
>Translated_380_residues MTITLSIPESLKPEDGRFGSGPSKIRPEQIAALDAGATTLLGTSHRQAPVKQLVASIREGLREFFHLSEGYEVALGNGGA SAFWEIACASLITRRAAFGTYGSFSAKFAASAANAPFLEDPVLFPGEPGTYRLPELTEGVDTYCWAHNETSTGVAAPIRR VAGSREAGALTVIDGTSAAGALPVDISQTDVYYFSPQKAFGADGGLWVAILSPEAIDRAAGVESSAHLEGAHRWVPPFLS LTTALNNSRKDQTLNTPAVATLIMMENQIRWLNNNGGLAWATTRCAKSASILYSWAERSEYAAPFVVDTDSRSNAVVTID LDERVQASQILSILRENGIVDAAGYRKLGRNQLRVGVFPSVEPADVMAFTKCVDYVVEHL >Mature_379_residues TITLSIPESLKPEDGRFGSGPSKIRPEQIAALDAGATTLLGTSHRQAPVKQLVASIREGLREFFHLSEGYEVALGNGGAS AFWEIACASLITRRAAFGTYGSFSAKFAASAANAPFLEDPVLFPGEPGTYRLPELTEGVDTYCWAHNETSTGVAAPIRRV AGSREAGALTVIDGTSAAGALPVDISQTDVYYFSPQKAFGADGGLWVAILSPEAIDRAAGVESSAHLEGAHRWVPPFLSL TTALNNSRKDQTLNTPAVATLIMMENQIRWLNNNGGLAWATTRCAKSASILYSWAERSEYAAPFVVDTDSRSNAVVTIDL DERVQASQILSILRENGIVDAAGYRKLGRNQLRVGVFPSVEPADVMAFTKCVDYVVEHL
Specific function: Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine [H]
COG id: COG1932
COG function: function code HE; Phosphoserine aminotransferase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000192 - InterPro: IPR022278 - InterPro: IPR006272 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00266 Aminotran_5 [H]
EC number: =2.6.1.52 [H]
Molecular weight: Translated: 40682; Mature: 40551
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTITLSIPESLKPEDGRFGSGPSKIRPEQIAALDAGATTLLGTSHRQAPVKQLVASIREG CEEEEECCCCCCCCCCCCCCCCCCCCHHHHHEECCCCCEEECCCCCCCHHHHHHHHHHHH LREFFHLSEGYEVALGNGGASAFWEIACASLITRRAAFGTYGSFSAKFAASAANAPFLED HHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCC PVLFPGEPGTYRLPELTEGVDTYCWAHNETSTGVAAPIRRVAGSREAGALTVIDGTSAAG CEECCCCCCCEECCHHHCCCHHEEEECCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCC ALPVDISQTDVYYFSPQKAFGADGGLWVAILSPEAIDRAAGVESSAHLEGAHRWVPPFLS CEEEECCCCEEEEECCCHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHCCCHHCCCHHHH LTTALNNSRKDQTLNTPAVATLIMMENQIRWLNNNGGLAWATTRCAKSASILYSWAERSE HHHHHCCCCCCCCCCCHHHHEEEEECCCEEEEECCCCEEEEEHHHHHHHHHHHHHHHHCC YAAPFVVDTDSRSNAVVTIDLDERVQASQILSILRENGIVDAAGYRKLGRNQLRVGVFPS CCCCEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHCCCEECHHHHHHCCCCEEEEECCC VEPADVMAFTKCVDYVVEHL CCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TITLSIPESLKPEDGRFGSGPSKIRPEQIAALDAGATTLLGTSHRQAPVKQLVASIREG EEEEECCCCCCCCCCCCCCCCCCCCHHHHHEECCCCCEEECCCCCCCHHHHHHHHHHHH LREFFHLSEGYEVALGNGGASAFWEIACASLITRRAAFGTYGSFSAKFAASAANAPFLED HHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCC PVLFPGEPGTYRLPELTEGVDTYCWAHNETSTGVAAPIRRVAGSREAGALTVIDGTSAAG CEECCCCCCCEECCHHHCCCHHEEEECCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCC ALPVDISQTDVYYFSPQKAFGADGGLWVAILSPEAIDRAAGVESSAHLEGAHRWVPPFLS CEEEECCCCEEEEECCCHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHCCCHHCCCHHHH LTTALNNSRKDQTLNTPAVATLIMMENQIRWLNNNGGLAWATTRCAKSASILYSWAERSE HHHHHCCCCCCCCCCCHHHHEEEEECCCEEEEECCCCEEEEEHHHHHHHHHHHHHHHHCC YAAPFVVDTDSRSNAVVTIDLDERVQASQILSILRENGIVDAAGYRKLGRNQLRVGVFPS CCCCEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHCCCEECHHHHHHCCCCEEEEECCC VEPADVMAFTKCVDYVVEHL CCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11234002 [H]