| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
Click here to switch to the map view.
The map label for this gene is 213692991
Identifier: 213692991
GI number: 213692991
Start: 2364381
End: 2365604
Strand: Direct
Name: 213692991
Synonym: Blon_2138
Alternate gene names: NA
Gene position: 2364381-2365604 (Clockwise)
Preceding gene: 213692990
Following gene: 213692992
Centisome position: 83.47
GC content: 64.46
Gene sequence:
>1224_bases ATGATGAGCATGAATGTGTGGAAGCGTGCCACGTTGGCGATCGTACGCAAGCCGGTACGCAGCGGCATCATCGGTCTGCT GATGCTGATGGTCTTCACGAGCCTGGTGGCGCAGGTCGGAGTCTCGACGGCCCTGCGTACCATGTCCGACAGCATCGGCG CGGGCATGGGCATAGGGTTTACCGTCAGCGCCGGCGAGAATCCCATCAGCGCCGAGGAAGCGAGCCGGTTCTCGCATATC CCCGGTGTGACGAAGACCGCCTATGCGACGAAGACCTTGGCGCAGGTGGATGGCGCGCGCCCGGTCATGCCCCGGCAGGG CCCCCGGCTGGACTCCGATCTGGCCATGCAGGTCAGCGTGCTGGGCACCACCGATTCCTCATTGTCCGAGGAATTCCAGA GCGGCCTGTACCGCCTGGAGCAGGGCCGCCATATCTCGGGCGACGGCGACAACGTGCTGGTCCACCGCGACTTCGCGTTG CAGAACGGCCTATCGGTCGGCTCGACATTCCGTCTCCGGCAGGAGGGGCGCAACGCCACGGTGCGTGTGGCCGGGATCTT CTCCGGCAACGTGCAGGCCCAAAGCCCCCTGCCCTCGGACACTTCCGAGAACCTCATCTATTCGGGCAGGCGAGTGACCT CCGCTCTGACCGGCAACGACCGGATCGGCATGATCCGATGCCTGTCGGATAATCCGCAGGACCTGTCCGCGGCGGTCAGT CAGGCCAAGACCATGGCCGGTGGCAAGTATGACGTCACCGACGATTCGGCCCGGCTCTCCGGCGTCCTGCAATCCGTGCA GACGGTGCGTGATCTGGTGCGCATGGTGCTGCTGTCCGTCTGCCTCGCGGACGTACTGGTGCTGGCGATGGCGCTGGTCT TCTGGATTCGCTCACGCATCCATGAGATAGGCACGCTTCTGGCCCTCGGCATCGACAAGATGCGGATAGTCGCACAACTC GCCATCGAAACCGGACTCATGGCGGCGGTCGCCGCCCTGTGTTCGCTGGGCACCGGCGCCATGCTGTCGGGATACGTGTC TTCCCGACTGTTGCGCGATTCGGGCGTCGCGCCGTTGGAATCGTTGCACGTGGAGGCCTTGCCGCCTGAGCAGACGGTGC TCATCCTGCTGCTCGGATGCGCGGTCATCGCCGTGGCCCTTGCCGTGTCATGCGCCGCCGTGCTGTCCAAATCCCCGAAA TCCATTCTTTCCTCTATGCGTTAG
Upstream 100 bases:
>100_bases TGTACGTGGCGCTCGGCCTGCTGGCGGTGATGCTGGTGTGCGTCGCGGTGGCGTGCATGCCGATGCTGCGTAAATCGCCG CGAGACCTGTCGGAGATTCG
Downstream 100 bases:
>100_bases GAGTCACCAATCATGTCTAACTGTCTGCAACTGGACCATGTCGATTACGCCTACGGCGCGGCGAAGATCCTTGTTCTCTC GGATGTCAGCGCGGATTTTG
Product: hypothetical protein
Products: NA
Alternate protein names: Efflux ABC Transporter Permease Protein; Peptide ABC Transporter Permease; ABC Transporter Permease; ABC Transporter; Permease; ABC Transporter Membrane Protein; Multidrug ABC Transporter Permease Protein; ABC Transporter Permease Protein
Number of amino acids: Translated: 407; Mature: 407
Protein sequence:
>407_residues MMSMNVWKRATLAIVRKPVRSGIIGLLMLMVFTSLVAQVGVSTALRTMSDSIGAGMGIGFTVSAGENPISAEEASRFSHI PGVTKTAYATKTLAQVDGARPVMPRQGPRLDSDLAMQVSVLGTTDSSLSEEFQSGLYRLEQGRHISGDGDNVLVHRDFAL QNGLSVGSTFRLRQEGRNATVRVAGIFSGNVQAQSPLPSDTSENLIYSGRRVTSALTGNDRIGMIRCLSDNPQDLSAAVS QAKTMAGGKYDVTDDSARLSGVLQSVQTVRDLVRMVLLSVCLADVLVLAMALVFWIRSRIHEIGTLLALGIDKMRIVAQL AIETGLMAAVAALCSLGTGAMLSGYVSSRLLRDSGVAPLESLHVEALPPEQTVLILLLGCAVIAVALAVSCAAVLSKSPK SILSSMR
Sequences:
>Translated_407_residues MMSMNVWKRATLAIVRKPVRSGIIGLLMLMVFTSLVAQVGVSTALRTMSDSIGAGMGIGFTVSAGENPISAEEASRFSHI PGVTKTAYATKTLAQVDGARPVMPRQGPRLDSDLAMQVSVLGTTDSSLSEEFQSGLYRLEQGRHISGDGDNVLVHRDFAL QNGLSVGSTFRLRQEGRNATVRVAGIFSGNVQAQSPLPSDTSENLIYSGRRVTSALTGNDRIGMIRCLSDNPQDLSAAVS QAKTMAGGKYDVTDDSARLSGVLQSVQTVRDLVRMVLLSVCLADVLVLAMALVFWIRSRIHEIGTLLALGIDKMRIVAQL AIETGLMAAVAALCSLGTGAMLSGYVSSRLLRDSGVAPLESLHVEALPPEQTVLILLLGCAVIAVALAVSCAAVLSKSPK SILSSMR >Mature_407_residues MMSMNVWKRATLAIVRKPVRSGIIGLLMLMVFTSLVAQVGVSTALRTMSDSIGAGMGIGFTVSAGENPISAEEASRFSHI PGVTKTAYATKTLAQVDGARPVMPRQGPRLDSDLAMQVSVLGTTDSSLSEEFQSGLYRLEQGRHISGDGDNVLVHRDFAL QNGLSVGSTFRLRQEGRNATVRVAGIFSGNVQAQSPLPSDTSENLIYSGRRVTSALTGNDRIGMIRCLSDNPQDLSAAVS QAKTMAGGKYDVTDDSARLSGVLQSVQTVRDLVRMVLLSVCLADVLVLAMALVFWIRSRIHEIGTLLALGIDKMRIVAQL AIETGLMAAVAALCSLGTGAMLSGYVSSRLLRDSGVAPLESLHVEALPPEQTVLILLLGCAVIAVALAVSCAAVLSKSPK SILSSMR
Specific function: Unknown
COG id: COG0577
COG function: function code V; ABC-type antimicrobial peptide transport system, permease component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42986; Mature: 42986
Theoretical pI: Translated: 8.99; Mature: 8.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMSMNVWKRATLAIVRKPVRSGIIGLLMLMVFTSLVAQVGVSTALRTMSDSIGAGMGIGF CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE TVSAGENPISAEEASRFSHIPGVTKTAYATKTLAQVDGARPVMPRQGPRLDSDLAMQVSV EEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEE LGTTDSSLSEEFQSGLYRLEQGRHISGDGDNVLVHRDFALQNGLSVGSTFRLRQEGRNAT EECCCHHHHHHHHHHHHHHHCCCEECCCCCEEEEEECHHHHCCCCCCCCHHHHHCCCCCE VRVAGIFSGNVQAQSPLPSDTSENLIYSGRRVTSALTGNDRIGMIRCLSDNPQDLSAAVS EEEEEEEECCCEECCCCCCCCCCCCEECCCHHHHHHCCCCCEEEEEECCCCCHHHHHHHH QAKTMAGGKYDVTDDSARLSGVLQSVQTVRDLVRMVLLSVCLADVLVLAMALVFWIRSRI HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HEIGTLLALGIDKMRIVAQLAIETGLMAAVAALCSLGTGAMLSGYVSSRLLRDSGVAPLE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHH SLHVEALPPEQTVLILLLGCAVIAVALAVSCAAVLSKSPKSILSSMR HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC >Mature Secondary Structure MMSMNVWKRATLAIVRKPVRSGIIGLLMLMVFTSLVAQVGVSTALRTMSDSIGAGMGIGF CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE TVSAGENPISAEEASRFSHIPGVTKTAYATKTLAQVDGARPVMPRQGPRLDSDLAMQVSV EEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEE LGTTDSSLSEEFQSGLYRLEQGRHISGDGDNVLVHRDFALQNGLSVGSTFRLRQEGRNAT EECCCHHHHHHHHHHHHHHHCCCEECCCCCEEEEEECHHHHCCCCCCCCHHHHHCCCCCE VRVAGIFSGNVQAQSPLPSDTSENLIYSGRRVTSALTGNDRIGMIRCLSDNPQDLSAAVS EEEEEEEECCCEECCCCCCCCCCCCEECCCHHHHHHCCCCCEEEEEECCCCCHHHHHHHH QAKTMAGGKYDVTDDSARLSGVLQSVQTVRDLVRMVLLSVCLADVLVLAMALVFWIRSRI HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HEIGTLLALGIDKMRIVAQLAIETGLMAAVAALCSLGTGAMLSGYVSSRLLRDSGVAPLE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHH SLHVEALPPEQTVLILLLGCAVIAVALAVSCAAVLSKSPKSILSSMR HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA