Click here to switch to the map view.

The map label for this gene is ytcP [H]

Identifier: 213692915

GI number: 213692915

Start: 2270002

End: 2270937

Strand: Reverse

Name: ytcP [H]

Synonym: Blon_2059

Alternate gene names: 213692915

Gene position: 2270937-2270002 (Counterclockwise)

Preceding gene: 213692916

Following gene: 213692914

Centisome position: 80.17

GC content: 56.3

Gene sequence:

>936_bases
ATGTCTGCAACAATTGAGGCTGTTACCCAGAACAAGAACGACATTCCCTGGAACAAGCACGTGCGCCAGAAGCAGAAGCC
GGGTGACCTGGCGGTGTCAGGCATCATCAATGTGCTGCTGCTCCTGACCATTGTGGCGGTGCTCTACCCGCTGTGGTTCG
TGGTCATCGCATCATTTTCAAATCCGAACGCCGTGGCCGGCGGTGAAGTGCTGCTGCTACCCAAGGGTGTGACCTTCGTT
GGCTATGCTAAGGTGTTCGCCAACCAGCGCATCTGGCAGGGCTATCTCAACACCATCATCTATTCGGTGGTCGGCACCGC
GGTCAACATGGCAGTGACCATTCCCTGCGCCTTCGCGCTATCCCGTCGCGAGTTCAAGCCGCGACGCGTGATCATGTTCC
TGTTCACCGTGACCATGTTCATCGCTGGCGGCCTGATTCCGAACTACCTGCTGTACAAGAGCCTCGGCATCAACAACAGC
ATGTGGGTGTTCATCCTGCCTGGCGCGGTTTCCGTGTACAACGTGATCGTGGCCCGCTCCTTCTTCGAAACCTCTATCCC
CGAAGAGCTCTTCGACGCGGCCCAGATCGACGGGCTGAGCTACTTTGGCTACTTCTTCAAGATTGTGCTGCCGTTAAGCT
CCGCGATTCTGGCTGTAATTGGTCTGTACTACTTTGTCGGCCACTGGAACGACTTCATGACGGGCCTTATCTACATCACC
GACGACAAGAAGCAGCCATTGCAGGTGGTGTTGCAGCAGTTGCTACTGGTGGCGCAGGGTACTGGAACCAATGTCAACGC
GGCTGCGCAGCAGCAGGCCGCCGATCAGATCAAGTTCGGCATCATCATCGTCTCTACCCTGCCTCTGCTTGTGCTCTATC
CGTTCTTGCAGAAGTACTTCAACAAGGGCGTGATGCTCGGTGCGGTCAAGGGTTGA

Upstream 100 bases:

>100_bases
CGGCCTGTTCAACACCTTGGTCAACTTCATCTTCTTGATCACCGCGAATGCAATCGCCAAGCGCGTTTCCGATACGAGCA
TTTTCTAGAAGGGTTTTATC

Downstream 100 bases:

>100_bases
GTCAAACGCAATCCGACAAGAGACAACCAATCTAAAAGCCAGCCGATAGAAAGGATTCGCTATGCTTGCCCGCTTCTCTG
TGGCCTACGAGCGGTTCTGC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MSATIEAVTQNKNDIPWNKHVRQKQKPGDLAVSGIINVLLLLTIVAVLYPLWFVVIASFSNPNAVAGGEVLLLPKGVTFV
GYAKVFANQRIWQGYLNTIIYSVVGTAVNMAVTIPCAFALSRREFKPRRVIMFLFTVTMFIAGGLIPNYLLYKSLGINNS
MWVFILPGAVSVYNVIVARSFFETSIPEELFDAAQIDGLSYFGYFFKIVLPLSSAILAVIGLYYFVGHWNDFMTGLIYIT
DDKKQPLQVVLQQLLLVAQGTGTNVNAAAQQQAADQIKFGIIIVSTLPLLVLYPFLQKYFNKGVMLGAVKG

Sequences:

>Translated_311_residues
MSATIEAVTQNKNDIPWNKHVRQKQKPGDLAVSGIINVLLLLTIVAVLYPLWFVVIASFSNPNAVAGGEVLLLPKGVTFV
GYAKVFANQRIWQGYLNTIIYSVVGTAVNMAVTIPCAFALSRREFKPRRVIMFLFTVTMFIAGGLIPNYLLYKSLGINNS
MWVFILPGAVSVYNVIVARSFFETSIPEELFDAAQIDGLSYFGYFFKIVLPLSSAILAVIGLYYFVGHWNDFMTGLIYIT
DDKKQPLQVVLQQLLLVAQGTGTNVNAAAQQQAADQIKFGIIIVSTLPLLVLYPFLQKYFNKGVMLGAVKG
>Mature_310_residues
SATIEAVTQNKNDIPWNKHVRQKQKPGDLAVSGIINVLLLLTIVAVLYPLWFVVIASFSNPNAVAGGEVLLLPKGVTFVG
YAKVFANQRIWQGYLNTIIYSVVGTAVNMAVTIPCAFALSRREFKPRRVIMFLFTVTMFIAGGLIPNYLLYKSLGINNSM
WVFILPGAVSVYNVIVARSFFETSIPEELFDAAQIDGLSYFGYFFKIVLPLSSAILAVIGLYYFVGHWNDFMTGLIYITD
DKKQPLQVVLQQLLLVAQGTGTNVNAAAQQQAADQIKFGIIIVSTLPLLVLYPFLQKYFNKGVMLGAVKG

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=285, Percent_Identity=28.4210526315789, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789860, Length=213, Percent_Identity=26.7605633802817, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34334; Mature: 34203

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSATIEAVTQNKNDIPWNKHVRQKQKPGDLAVSGIINVLLLLTIVAVLYPLWFVVIASFS
CCCCHHHHHCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NPNAVAGGEVLLLPKGVTFVGYAKVFANQRIWQGYLNTIIYSVVGTAVNMAVTIPCAFAL
CCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRREFKPRRVIMFLFTVTMFIAGGLIPNYLLYKSLGINNSMWVFILPGAVSVYNVIVARS
HHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHH
FFETSIPEELFDAAQIDGLSYFGYFFKIVLPLSSAILAVIGLYYFVGHWNDFMTGLIYIT
HHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEE
DDKKQPLQVVLQQLLLVAQGTGTNVNAAAQQQAADQIKFGIIIVSTLPLLVLYPFLQKYF
CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NKGVMLGAVKG
CCCEEEEECCC
>Mature Secondary Structure 
SATIEAVTQNKNDIPWNKHVRQKQKPGDLAVSGIINVLLLLTIVAVLYPLWFVVIASFS
CCCHHHHHCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NPNAVAGGEVLLLPKGVTFVGYAKVFANQRIWQGYLNTIIYSVVGTAVNMAVTIPCAFAL
CCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRREFKPRRVIMFLFTVTMFIAGGLIPNYLLYKSLGINNSMWVFILPGAVSVYNVIVARS
HHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHH
FFETSIPEELFDAAQIDGLSYFGYFFKIVLPLSSAILAVIGLYYFVGHWNDFMTGLIYIT
HHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEE
DDKKQPLQVVLQQLLLVAQGTGTNVNAAAQQQAADQIKFGIIIVSTLPLLVLYPFLQKYF
CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NKGVMLGAVKG
CCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377; 8763940 [H]