Click here to switch to the map view.

The map label for this gene is yecS [H]

Identifier: 213692879

GI number: 213692879

Start: 2207607

End: 2208590

Strand: Reverse

Name: yecS [H]

Synonym: Blon_2020

Alternate gene names: 213692879

Gene position: 2208590-2207607 (Counterclockwise)

Preceding gene: 213692880

Following gene: 213692878

Centisome position: 77.97

GC content: 59.96

Gene sequence:

>984_bases
ATGGCGAAGAAAGAAGTCGACGGTGAGGGGCTGAACATCCCCAACCGCATCAAGGCGCTGCCGGTCAAGCGCCCCGGCCC
GATTGTGGCCGCAGTGATCGTGGTACTGCTCGCCGCGATGCTCATTCAAGGCTTGATTACCAATCCGCGACTGGATTGGC
CCACCGTCTGGAAGTACCTGTTCAACGAGAACGTGCTTGAAGGCATTCGCTATACCTTGGAGCTCACCGTGATCTCCATG
GTCGTGGCGATCATCCTGTCGGTGATTCTTGCCATCATGCGCAAATCCATCAATCCGGTGCTGCGCGGCGTCAGCTGGTT
CTTCATCTGGTTCTTCCGCGGCACGCCTGTGTACACGCAGCTCATTTTCTGGGGTCTGTTCGCCGTGCTGATTCCCAAGA
TCAGCCTCGGCATTCCGTTCACCTCGGTGGAGTTCTGGAGCATCGACTCCAACGTGGTGGTCACCGCATTCAACGCCGCA
TGGATTGGTCTGGCCCTGAACGAGGCCGCCTACCTGTCCGAAATCGTGCGTGCCGGCCTTGAAGCCGTGGACCCCGGCCA
GACCGAGGCGGCCAAGGCATTGGGCATGAACCGCACGCTCATCATGCGCCGCATCGTGCTGCCGCAGGCCATGCGCATCA
TCATCCCGCCCACCGGCAACGAGACCATCGGCATGCTGAAGACCACCTCGCTGGTCACCGCCGTGCCGTTCACCCTCGAG
TTGCAGTTTGCCACCAACGCCATCGCCAACCGTATCTACAAGCCGATTCCGCTGCTTCTCGTGGCCTGCTTCTGGTACCT
GCTGATCACCTCCATTCTGATGGTTGTGCAGTCCCGCCTCGAGGCGCACTTCGGCAAGGGCTTCGATGCCCGACCGGTGG
GCACCAAGGGCAAGCAGGCGCCATTGCCGGGTAAGACCGACGGTGAACCGAAGGATGACGTGGACAAGCTCAACCAGACC
ACATTTGTCGGATTGAATGCATAA

Upstream 100 bases:

>100_bases
GCGCACTGTTTGTAACACAGTCGCCCCATTCGTGCACTAAGGTTCAATGCTAGTCGCAACTTGCAGTTCAGGCTGCCCAA
CACATCCAAGGAACCAGATT

Downstream 100 bases:

>100_bases
GGCGGGAGCGCGATTATGACTACGAATGACATCACCAGTGTTGCCCCGGTCGTGCGCAAGGCGGCTGACGGTTCCGTGAT
TCCTGCTGTCAAGGCCGTGC

Product: transcriptional regulator, Fis family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MAKKEVDGEGLNIPNRIKALPVKRPGPIVAAVIVVLLAAMLIQGLITNPRLDWPTVWKYLFNENVLEGIRYTLELTVISM
VVAIILSVILAIMRKSINPVLRGVSWFFIWFFRGTPVYTQLIFWGLFAVLIPKISLGIPFTSVEFWSIDSNVVVTAFNAA
WIGLALNEAAYLSEIVRAGLEAVDPGQTEAAKALGMNRTLIMRRIVLPQAMRIIIPPTGNETIGMLKTTSLVTAVPFTLE
LQFATNAIANRIYKPIPLLLVACFWYLLITSILMVVQSRLEAHFGKGFDARPVGTKGKQAPLPGKTDGEPKDDVDKLNQT
TFVGLNA

Sequences:

>Translated_327_residues
MAKKEVDGEGLNIPNRIKALPVKRPGPIVAAVIVVLLAAMLIQGLITNPRLDWPTVWKYLFNENVLEGIRYTLELTVISM
VVAIILSVILAIMRKSINPVLRGVSWFFIWFFRGTPVYTQLIFWGLFAVLIPKISLGIPFTSVEFWSIDSNVVVTAFNAA
WIGLALNEAAYLSEIVRAGLEAVDPGQTEAAKALGMNRTLIMRRIVLPQAMRIIIPPTGNETIGMLKTTSLVTAVPFTLE
LQFATNAIANRIYKPIPLLLVACFWYLLITSILMVVQSRLEAHFGKGFDARPVGTKGKQAPLPGKTDGEPKDDVDKLNQT
TFVGLNA
>Mature_326_residues
AKKEVDGEGLNIPNRIKALPVKRPGPIVAAVIVVLLAAMLIQGLITNPRLDWPTVWKYLFNENVLEGIRYTLELTVISMV
VAIILSVILAIMRKSINPVLRGVSWFFIWFFRGTPVYTQLIFWGLFAVLIPKISLGIPFTSVEFWSIDSNVVVTAFNAAW
IGLALNEAAYLSEIVRAGLEAVDPGQTEAAKALGMNRTLIMRRIVLPQAMRIIIPPTGNETIGMLKTTSLVTAVPFTLEL
QFATNAIANRIYKPIPLLLVACFWYLLITSILMVVQSRLEAHFGKGFDARPVGTKGKQAPLPGKTDGEPKDDVDKLNQTT
FVGLNA

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=223, Percent_Identity=35.4260089686099, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1788645, Length=218, Percent_Identity=33.9449541284404, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1787030, Length=232, Percent_Identity=26.2931034482759, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786873, Length=229, Percent_Identity=30.5676855895196, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787087, Length=229, Percent_Identity=29.2576419213974, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI87082239, Length=165, Percent_Identity=33.3333333333333, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1788646, Length=231, Percent_Identity=30.7359307359307, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI48994930, Length=131, Percent_Identity=30.5343511450382, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1786874, Length=174, Percent_Identity=26.4367816091954, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787086, Length=192, Percent_Identity=28.125, Blast_Score=68, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36040; Mature: 35909

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKEVDGEGLNIPNRIKALPVKRPGPIVAAVIVVLLAAMLIQGLITNPRLDWPTVWKYL
CCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
FNENVLEGIRYTLELTVISMVVAIILSVILAIMRKSINPVLRGVSWFFIWFFRGTPVYTQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
LIFWGLFAVLIPKISLGIPFTSVEFWSIDSNVVVTAFNAAWIGLALNEAAYLSEIVRAGL
HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCH
EAVDPGQTEAAKALGMNRTLIMRRIVLPQAMRIIIPPTGNETIGMLKTTSLVTAVPFTLE
HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCEEEECCCCCCCEEHHHHHHHHHHCCEEEE
LQFATNAIANRIYKPIPLLLVACFWYLLITSILMVVQSRLEAHFGKGFDARPVGTKGKQA
EHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PLPGKTDGEPKDDVDKLNQTTFVGLNA
CCCCCCCCCCCHHHHHCCCCEEEEECC
>Mature Secondary Structure 
AKKEVDGEGLNIPNRIKALPVKRPGPIVAAVIVVLLAAMLIQGLITNPRLDWPTVWKYL
CCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
FNENVLEGIRYTLELTVISMVVAIILSVILAIMRKSINPVLRGVSWFFIWFFRGTPVYTQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
LIFWGLFAVLIPKISLGIPFTSVEFWSIDSNVVVTAFNAAWIGLALNEAAYLSEIVRAGL
HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCH
EAVDPGQTEAAKALGMNRTLIMRRIVLPQAMRIIIPPTGNETIGMLKTTSLVTAVPFTLE
HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCEEEECCCCCCCEEHHHHHHHHHHCCEEEE
LQFATNAIANRIYKPIPLLLVACFWYLLITSILMVVQSRLEAHFGKGFDARPVGTKGKQA
EHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PLPGKTDGEPKDDVDKLNQTTFVGLNA
CCCCCCCCCCCHHHHHCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]