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The map label for this gene is pdxS [H]

Identifier: 213692853

GI number: 213692853

Start: 2174067

End: 2174942

Strand: Reverse

Name: pdxS [H]

Synonym: Blon_1994

Alternate gene names: 213692853

Gene position: 2174942-2174067 (Counterclockwise)

Preceding gene: 213692854

Following gene: 213692852

Centisome position: 76.78

GC content: 64.5

Gene sequence:

>876_bases
ATGACGCAGAATCGTGCGGAACTCAACCGTAATCTGGCCCAGATGCTCAAGGGCGGCGTGATCATGGACGTCACCACGCC
CGAACAGGCGAAAATCGCGCAGGACGCCGGCGCCTGCGCGGTGATGGCGCTGGAGCGCATCCCCGCTGACATTCGCGCCG
CCGGTGGCGTCTCCCGCATGAGCGACCCGGCCATGATCAAGGGCATTCAGGAAGCTGTCTCGATTCCGGTCATGGCCAAG
GTGCGCATCGGCCACATCGCCGAAGCCCGCATTCTGCAGGCCATCGAAATCGACTACATCGACGAATCCGAAGTGCTTTC
CCCGGCCGACGACGTGTACCACATCGACAAGAACCAGTTCGACGTGCCGTTCGTGTGCGGCGCGAAGAACCTGGGCGAGG
CGCTGCGCCGCATCGCCGAGGGTGCTGCCATGATTCGCACCAAGGGCGAGCCCGGCACCGGCGACGTGATTCAGGCCGTG
CGTCATATGCGCACCATGAATAAGCAGATCCGCGAACTCGTCGGCCTGCGCGACGACGAGGTGTACGAGGCGGCCAAGCA
GCTGGCCGTGCCATATGATCTGGCCAAGTACGTGCACGACAACGGCCGTCTGCCGGTCGTGAACTTCGCCGCCGGTGGCG
TGGCCACCCCGGCTGACGCCGCTCTGATGATGGAGCTCGGTGCTGAAGGCGTATTCGTGGGCTCCGGCATCTTCAAGTCC
GGCGACCCGGCCAAGCGCGCCGCCGCCATCGTCAAGGCCACTGCCAACTGGCAGGACGCCGATCTGCTCGCCAAGCTGTC
CGAAAACCTCGGCGAAGCCATGGTCGGCATCAACGAGGACGAGATTCAGACCATCATGGCCGCTCGCGGCGAGTGA

Upstream 100 bases:

>100_bases
GGATTGGCCCCATCCAAATTGGACTGGTCTGGGTGGGGCCAATCCGATTCGTTCAATAATGAAGCGCGATACCAAGCAAC
GTCGAAACGAAGGAAAACTC

Downstream 100 bases:

>100_bases
GTGCATCACCTTGGCTCCCCTCTTTGAGGGGAGCCAAGAAAAGGTGACGCTCCCGCCAGCGGGAGTCAAGGCCCAAGGAG
ACAACATGGTTGTAGCTGCT

Product: pyridoxal biosynthesis lyase PdxS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 290

Protein sequence:

>291_residues
MTQNRAELNRNLAQMLKGGVIMDVTTPEQAKIAQDAGACAVMALERIPADIRAAGGVSRMSDPAMIKGIQEAVSIPVMAK
VRIGHIAEARILQAIEIDYIDESEVLSPADDVYHIDKNQFDVPFVCGAKNLGEALRRIAEGAAMIRTKGEPGTGDVIQAV
RHMRTMNKQIRELVGLRDDEVYEAAKQLAVPYDLAKYVHDNGRLPVVNFAAGGVATPADAALMMELGAEGVFVGSGIFKS
GDPAKRAAAIVKATANWQDADLLAKLSENLGEAMVGINEDEIQTIMAARGE

Sequences:

>Translated_291_residues
MTQNRAELNRNLAQMLKGGVIMDVTTPEQAKIAQDAGACAVMALERIPADIRAAGGVSRMSDPAMIKGIQEAVSIPVMAK
VRIGHIAEARILQAIEIDYIDESEVLSPADDVYHIDKNQFDVPFVCGAKNLGEALRRIAEGAAMIRTKGEPGTGDVIQAV
RHMRTMNKQIRELVGLRDDEVYEAAKQLAVPYDLAKYVHDNGRLPVVNFAAGGVATPADAALMMELGAEGVFVGSGIFKS
GDPAKRAAAIVKATANWQDADLLAKLSENLGEAMVGINEDEIQTIMAARGE
>Mature_290_residues
TQNRAELNRNLAQMLKGGVIMDVTTPEQAKIAQDAGACAVMALERIPADIRAAGGVSRMSDPAMIKGIQEAVSIPVMAKV
RIGHIAEARILQAIEIDYIDESEVLSPADDVYHIDKNQFDVPFVCGAKNLGEALRRIAEGAAMIRTKGEPGTGDVIQAVR
HMRTMNKQIRELVGLRDDEVYEAAKQLAVPYDLAKYVHDNGRLPVVNFAAGGVATPADAALMMELGAEGVFVGSGIFKSG
DPAKRAAAIVKATANWQDADLLAKLSENLGEAMVGINEDEIQTIMAARGE

Specific function: Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring [H]

COG id: COG0214

COG function: function code H; Pyridoxine biosynthesis enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pdxS/SNZ family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323743, Length=284, Percent_Identity=61.6197183098592, Blast_Score=357, Evalue=1e-99,
Organism=Saccharomyces cerevisiae, GI6323996, Length=287, Percent_Identity=63.7630662020906, Blast_Score=352, Evalue=6e-98,
Organism=Saccharomyces cerevisiae, GI6321049, Length=287, Percent_Identity=63.7630662020906, Blast_Score=351, Evalue=7e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011060
- InterPro:   IPR001852 [H]

Pfam domain/function: PF01680 SOR_SNZ [H]

EC number: NA

Molecular weight: Translated: 31106; Mature: 30975

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS01235 PDXS_SNZ_1 ; PS51129 PDXS_SNZ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQNRAELNRNLAQMLKGGVIMDVTTPEQAKIAQDAGACAVMALERIPADIRAAGGVSRM
CCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHCCHHHHHHHHHCCHHHHHCCCCCCC
SDPAMIKGIQEAVSIPVMAKVRIGHIAEARILQAIEIDYIDESEVLSPADDVYHIDKNQF
CCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHHEEECCCCCC
DVPFVCGAKNLGEALRRIAEGAAMIRTKGEPGTGDVIQAVRHMRTMNKQIRELVGLRDDE
CCCEEECCHHHHHHHHHHHCCHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
VYEAAKQLAVPYDLAKYVHDNGRLPVVNFAAGGVATPADAALMMELGAEGVFVGSGIFKS
HHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCEEEECCCCCCC
GDPAKRAAAIVKATANWQDADLLAKLSENLGEAMVGINEDEIQTIMAARGE
CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
TQNRAELNRNLAQMLKGGVIMDVTTPEQAKIAQDAGACAVMALERIPADIRAAGGVSRM
CCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHCCHHHHHHHHHCCHHHHHCCCCCCC
SDPAMIKGIQEAVSIPVMAKVRIGHIAEARILQAIEIDYIDESEVLSPADDVYHIDKNQF
CCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHHEEECCCCCC
DVPFVCGAKNLGEALRRIAEGAAMIRTKGEPGTGDVIQAVRHMRTMNKQIRELVGLRDDE
CCCEEECCHHHHHHHHHHHCCHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
VYEAAKQLAVPYDLAKYVHDNGRLPVVNFAAGGVATPADAALMMELGAEGVFVGSGIFKS
HHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCEEEECCCCCCC
GDPAKRAAAIVKATANWQDADLLAKLSENLGEAMVGINEDEIQTIMAARGE
CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA