Definition Bifidobacterium longum subsp. infantis ATCC 15697, complete genome.
Accession NC_011593
Length 2,832,748

Click here to switch to the map view.

The map label for this gene is 213692541

Identifier: 213692541

GI number: 213692541

Start: 1826881

End: 1827435

Strand: Reverse

Name: 213692541

Synonym: Blon_1673

Alternate gene names: NA

Gene position: 1827435-1826881 (Counterclockwise)

Preceding gene: 213692544

Following gene: 213692540

Centisome position: 64.51

GC content: 65.77

Gene sequence:

>555_bases
ATGGCAGCCAAACGACGCACGCCTGGAGCCGGAAGCGTGTTCAGGGACGCGAACGGCGTCTGGCACTTCCGCAAGGACCT
CGGCAAGGACCCCGCCACCGGCAAACGCCGCATGATCCAGGCCAAGGGGCGCACCAAGGCCGAAGCCAGGGAACGTTTCG
ACGCCAAGATCGCCGAGCTCGAACGCACCGGCCTCATGCCCGGCGCCAAATCCCCGTACCTCAACGACTACGTGGAACGC
TGGCTGGAGGACTACCGGCTTCGCGTCAAGCCCACCACCTATCGGACGCGGGCCGGCCGCCTGCATGCCTGCTGCCAGGT
CATCGGCCACGTGCGCCTCGCGGACCTGACTCCGGAGCATGTCCGCAGTTGCATGCGCGTGCTGGGGGAGCGGCTCGCCC
CCTCCACGCTGAAGGACCATTTCGTCAGCCTGAAGATGGTGCTGGACGACGCCGAACTGGAGGAGCTGATACCGGTGGAC
CCGTGCAGGAAGGTGCGGCCGCCGCGCGTGGAGCCGACACCGGTGTTTTTGTTCAATAGGAAGTTGAGGTTTTAG

Upstream 100 bases:

>100_bases
CGGGCCGTTTGTGACACCGTTTGAGTACCTTTAGAGTACCCTTGCGGGACCGCATCCGGAGACACACTCGAAAGGGCGCT
CCCGACAGAAGGGAGCCGAC

Downstream 100 bases:

>100_bases
TCACGAAGGTTTTTCGGGTTTAGGCGGAAAGGCATGCCGACCACCCGTGGGCCTTAGCCTGATGGTGCTTCTAGTTCCAT
TCGGGAAAGGTCCGGAAAGG

Product: prophage LambdaBa04, site-specific recombinase, phage integrase family

Products: NA

Alternate protein names: Prophage; Integrase/Recombinase; Site-Specific Recombinase Phage Integrase Family; Phage Integrase Family Protein

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MAAKRRTPGAGSVFRDANGVWHFRKDLGKDPATGKRRMIQAKGRTKAEARERFDAKIAELERTGLMPGAKSPYLNDYVER
WLEDYRLRVKPTTYRTRAGRLHACCQVIGHVRLADLTPEHVRSCMRVLGERLAPSTLKDHFVSLKMVLDDAELEELIPVD
PCRKVRPPRVEPTPVFLFNRKLRF

Sequences:

>Translated_184_residues
MAAKRRTPGAGSVFRDANGVWHFRKDLGKDPATGKRRMIQAKGRTKAEARERFDAKIAELERTGLMPGAKSPYLNDYVER
WLEDYRLRVKPTTYRTRAGRLHACCQVIGHVRLADLTPEHVRSCMRVLGERLAPSTLKDHFVSLKMVLDDAELEELIPVD
PCRKVRPPRVEPTPVFLFNRKLRF
>Mature_183_residues
AAKRRTPGAGSVFRDANGVWHFRKDLGKDPATGKRRMIQAKGRTKAEARERFDAKIAELERTGLMPGAKSPYLNDYVERW
LEDYRLRVKPTTYRTRAGRLHACCQVIGHVRLADLTPEHVRSCMRVLGERLAPSTLKDHFVSLKMVLDDAELEELIPVDP
CRKVRPPRVEPTPVFLFNRKLRF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21164; Mature: 21033

Theoretical pI: Translated: 10.77; Mature: 10.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAKRRTPGAGSVFRDANGVWHFRKDLGKDPATGKRRMIQAKGRTKAEARERFDAKIAEL
CCCCCCCCCCCCHHHCCCCCHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHH
ERTGLMPGAKSPYLNDYVERWLEDYRLRVKPTTYRTRAGRLHACCQVIGHVRLADLTPEH
HHHCCCCCCCCCHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHCCHHCCCCHHH
VRSCMRVLGERLAPSTLKDHFVSLKMVLDDAELEELIPVDPCRKVRPPRVEPTPVFLFNR
HHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCHHCCCCCCCCCCEEEEECC
KLRF
CCCC
>Mature Secondary Structure 
AAKRRTPGAGSVFRDANGVWHFRKDLGKDPATGKRRMIQAKGRTKAEARERFDAKIAEL
CCCCCCCCCCCHHHCCCCCHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHH
ERTGLMPGAKSPYLNDYVERWLEDYRLRVKPTTYRTRAGRLHACCQVIGHVRLADLTPEH
HHHCCCCCCCCCHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHCCHHCCCCHHH
VRSCMRVLGERLAPSTLKDHFVSLKMVLDDAELEELIPVDPCRKVRPPRVEPTPVFLFNR
HHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCHHCCCCCCCCCCEEEEECC
KLRF
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA