| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is ykaA [H]
Identifier: 213692505
GI number: 213692505
Start: 1786786
End: 1787409
Strand: Reverse
Name: ykaA [H]
Synonym: Blon_1634
Alternate gene names: 213692505
Gene position: 1787409-1786786 (Counterclockwise)
Preceding gene: 213692506
Following gene: 213692502
Centisome position: 63.1
GC content: 59.78
Gene sequence:
>624_bases ATGGCGAGACAAAAAGACGTGTTCTACTTCGACGGATTCCGCCGCAGCGCGGACTACGCATGCCAGGCCGCGAAGCTGCT GTCCGAGGTCATGCACGACTTCAATCCGGACCAGCTGCGCGAACGCATGGACAGCATGCACGCGATTGAGAAGTCGGCGG ACGAGGTGCGCCACGACATGATGGACGAACTGGTGACCGCGTTCATCACGCCGTTCGACCGCGAGGACATCGACGAGCTT GGCCACGTGCTCGACGATGTGACCGACAGCATCGAAGGCGTACTCAACCGCATGTACTACGACAATGTGACCGACATGCG CGACGATGCGGTCCAGATGTCGGATATGGTGGTGCGCGCCACGGAAAGCATCTGCGAGCTGGTCAACGAACTGCCGCGAT TCCGGCATTCCAAGACGTTGCGCGAACTGGTGTTCGCCATCAACACGATCGAAACGGACGCCGACCACCTGTTCATCGAG TCGATGCGCACGCTGCACACCACCTGCACCGATCCGCTGCAGGTGTTCGCCTGGCATGACGTGTACCGTCACCTCGAACA GTGCTCCGACGACTGCGAGCGCGTGGCCAACACCATCGACAGTATCGTCATGAAAAACAGCTGA
Upstream 100 bases:
>100_bases TGATGCTCACCTGGGTGTTCACCTTCCCCGGTTGCGGTCTCATCAGCTTCGTAATGGCCAAACTGTTCATGGTCGTGTTC TAGAAAGGAATCCACCCATC
Downstream 100 bases:
>100_bases GGTTGGTTTTTCACAACCTCCCTCTGATGAGCCGAGCCGTGAAGAAAACGCCGGAGGTGTTTTTAGGCGAGGGTGAGTGA GAACGAGCGAATAAGAGGTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 207; Mature: 206
Protein sequence:
>207_residues MARQKDVFYFDGFRRSADYACQAAKLLSEVMHDFNPDQLRERMDSMHAIEKSADEVRHDMMDELVTAFITPFDREDIDEL GHVLDDVTDSIEGVLNRMYYDNVTDMRDDAVQMSDMVVRATESICELVNELPRFRHSKTLRELVFAINTIETDADHLFIE SMRTLHTTCTDPLQVFAWHDVYRHLEQCSDDCERVANTIDSIVMKNS
Sequences:
>Translated_207_residues MARQKDVFYFDGFRRSADYACQAAKLLSEVMHDFNPDQLRERMDSMHAIEKSADEVRHDMMDELVTAFITPFDREDIDEL GHVLDDVTDSIEGVLNRMYYDNVTDMRDDAVQMSDMVVRATESICELVNELPRFRHSKTLRELVFAINTIETDADHLFIE SMRTLHTTCTDPLQVFAWHDVYRHLEQCSDDCERVANTIDSIVMKNS >Mature_206_residues ARQKDVFYFDGFRRSADYACQAAKLLSEVMHDFNPDQLRERMDSMHAIEKSADEVRHDMMDELVTAFITPFDREDIDELG HVLDDVTDSIEGVLNRMYYDNVTDMRDDAVQMSDMVVRATESICELVNELPRFRHSKTLRELVFAINTIETDADHLFIES MRTLHTTCTDPLQVFAWHDVYRHLEQCSDDCERVANTIDSIVMKNS
Specific function: Unknown
COG id: COG1392
COG function: function code P; Phosphate transport regulator (distant homolog of PhoU)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0111 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012347 - InterPro: IPR018445 [H]
Pfam domain/function: PF01865 PhoU_div [H]
EC number: NA
Molecular weight: Translated: 24125; Mature: 23994
Theoretical pI: Translated: 4.35; Mature: 4.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 5.8 %Met (Translated Protein) 8.2 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 5.3 %Met (Mature Protein) 7.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARQKDVFYFDGFRRSADYACQAAKLLSEVMHDFNPDQLRERMDSMHAIEKSADEVRHDM CCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH MDELVTAFITPFDREDIDELGHVLDDVTDSIEGVLNRMYYDNVTDMRDDAVQMSDMVVRA HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH TESICELVNELPRFRHSKTLRELVFAINTIETDADHLFIESMRTLHTTCTDPLQVFAWHD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH VYRHLEQCSDDCERVANTIDSIVMKNS HHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure ARQKDVFYFDGFRRSADYACQAAKLLSEVMHDFNPDQLRERMDSMHAIEKSADEVRHDM CCCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH MDELVTAFITPFDREDIDELGHVLDDVTDSIEGVLNRMYYDNVTDMRDDAVQMSDMVVRA HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH TESICELVNELPRFRHSKTLRELVFAINTIETDADHLFIESMRTLHTTCTDPLQVFAWHD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH VYRHLEQCSDDCERVANTIDSIVMKNS HHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]