BacMap

Definition	Bifidobacterium longum subsp. infantis ATCC 15697, complete genome.
Accession	NC_011593
Length	2,832,748

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The map label for this gene is ylmA [H]

Identifier: 213692349

GI number: 213692349

Start: 1638533

End: 1639381

Strand: Reverse

Name: ylmA [H]

Synonym: Blon_1476

Alternate gene names: 213692349

Gene position: 1639381-1638533 (Counterclockwise)

Preceding gene: 213692350

Following gene: 213692348

Centisome position: 57.87

GC content: 63.13

Gene sequence:

>849_bases
ATGACAAACACCGTCCTCCAACTCGACAACGTCGAATTCCGGCGCAACCGTCGCGTCATCATCACCGACGTGAACCTCAC
CATCAACGCGGGGGAGCGTTGGGTGCTGTTCGGTCCGAACGGCATCGGCAAATCCACCGCGGTCGACATGCTGGCCACCC
GCACGTTCCCCTCGGAAGGCCGCGTATTCATCCTCGGCCATCAACTCGGCAAATACGACGTATTCAAACTGCGCACCCGC
ATCGGTCTCGCCTCGGCCGACCTGGGCCGGCAGTTCCCCGAGTTCGAGGACCCGCTGGACGCCGTGGTCACCGGCCTGTC
CGCCGTGACCGGGCGCTGGCGCGACACCTACACGCAAGAGGAATACGCCCGCGCCCGCCAGCTGCTGCGCGATTTTCGCG
TCTCCTATCTGGAAGGCAAGGAGATGTGGCGACTGTCCGAAGGCGAACGCACCCGCGTATTGATCGCCCGTGCGCTGATG
GGAGATCCCGAGCTGCTCATCATGGATGAGCCGACCACCGGCCTCGACTTGGGTGGTCGTGAGCAGGTGATGCGCACGCT
GAGCCGAATCGGCGAGGAAAGCTCCGAGCGTGCCGTGGTGCTGGTCACCCATCGACTGGAGGAGATTCCGGCTGGTTTCG
ACCACATCGCTATCATGGGACGAAAGCCGATTCCTGCTGAGGACGCCACCGAAGCGGGCGTGGATTCAATGGGTAATCCC
GGTGCTGGCACCATCGTCTACACCGGTTCGTTGGAGAATGGCCTGACCGACGAACGCTTGTCGGAATTGTTCGGTATGCC
CATCGAAGTCCAGCACACCCACGGCCGCTGGGCCGCCTACGCCGTGTGA

Upstream 100 bases:

>100_bases
CTCAGGTACCGGTTTCTTGGCTCCCCTCTTTAAGGGGAGTCGTCCGCGAAGCGTACTGAGGGGAGTCGTCAGACCGCGAA
TCATAGGTAGTATTTCACTC

Downstream 100 bases:

>100_bases
TGCTTGTAGGTTTTTAGGCGGGATTTTCTTCGCCCCCCTCTGGAGGAGCTGTCAGCGTAAGCTGACTGGGGGAGGTCCAA
CCAGTTACGAAGGCAACCAT

Product: ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MTNTVLQLDNVEFRRNRRVIITDVNLTINAGERWVLFGPNGIGKSTAVDMLATRTFPSEGRVFILGHQLGKYDVFKLRTR
IGLASADLGRQFPEFEDPLDAVVTGLSAVTGRWRDTYTQEEYARARQLLRDFRVSYLEGKEMWRLSEGERTRVLIARALM
GDPELLIMDEPTTGLDLGGREQVMRTLSRIGEESSERAVVLVTHRLEEIPAGFDHIAIMGRKPIPAEDATEAGVDSMGNP
GAGTIVYTGSLENGLTDERLSELFGMPIEVQHTHGRWAAYAV

Sequences:

>Translated_282_residues
MTNTVLQLDNVEFRRNRRVIITDVNLTINAGERWVLFGPNGIGKSTAVDMLATRTFPSEGRVFILGHQLGKYDVFKLRTR
IGLASADLGRQFPEFEDPLDAVVTGLSAVTGRWRDTYTQEEYARARQLLRDFRVSYLEGKEMWRLSEGERTRVLIARALM
GDPELLIMDEPTTGLDLGGREQVMRTLSRIGEESSERAVVLVTHRLEEIPAGFDHIAIMGRKPIPAEDATEAGVDSMGNP
GAGTIVYTGSLENGLTDERLSELFGMPIEVQHTHGRWAAYAV
>Mature_281_residues
TNTVLQLDNVEFRRNRRVIITDVNLTINAGERWVLFGPNGIGKSTAVDMLATRTFPSEGRVFILGHQLGKYDVFKLRTRI
GLASADLGRQFPEFEDPLDAVVTGLSAVTGRWRDTYTQEEYARARQLLRDFRVSYLEGKEMWRLSEGERTRVLIARALMG
DPELLIMDEPTTGLDLGGREQVMRTLSRIGEESSERAVVLVTHRLEEIPAGFDHIAIMGRKPIPAEDATEAGVDSMGNPG
AGTIVYTGSLENGLTDERLSELFGMPIEVQHTHGRWAAYAV

Specific function: Unknown

COG id: COG1119

COG function: function code P; ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI21536378, Length=211, Percent_Identity=28.9099526066351, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI255708477, Length=215, Percent_Identity=30.2325581395349, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI171184400, Length=209, Percent_Identity=29.6650717703349, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI116734710, Length=217, Percent_Identity=29.0322580645161, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI9961250, Length=223, Percent_Identity=27.8026905829596, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI4505771, Length=223, Percent_Identity=27.8026905829596, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI9961252, Length=223, Percent_Identity=27.8026905829596, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI27881501, Length=203, Percent_Identity=28.5714285714286, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI30795238, Length=203, Percent_Identity=28.5714285714286, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI42741659, Length=223, Percent_Identity=29.5964125560538, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI27262624, Length=219, Percent_Identity=26.027397260274, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI27262626, Length=219, Percent_Identity=26.027397260274, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI31657092, Length=205, Percent_Identity=26.3414634146341, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI150417984, Length=219, Percent_Identity=27.3972602739726, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI27436953, Length=194, Percent_Identity=24.7422680412371, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI9955963, Length=214, Percent_Identity=27.5700934579439, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI153792144, Length=183, Percent_Identity=25.1366120218579, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI105990541, Length=194, Percent_Identity=29.3814432989691, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1786319, Length=196, Percent_Identity=31.6326530612245, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1786563, Length=209, Percent_Identity=29.1866028708134, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788761, Length=226, Percent_Identity=26.5486725663717, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787712, Length=260, Percent_Identity=26.5384615384615, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789672, Length=206, Percent_Identity=27.6699029126214, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1790739, Length=212, Percent_Identity=25.9433962264151, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI87081791, Length=222, Percent_Identity=30.1801801801802, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787089, Length=205, Percent_Identity=28.780487804878, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788450, Length=201, Percent_Identity=30.3482587064677, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1786975, Length=214, Percent_Identity=30.8411214953271, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1788225, Length=213, Percent_Identity=27.6995305164319, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787792, Length=223, Percent_Identity=29.5964125560538, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787370, Length=200, Percent_Identity=29, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786698, Length=207, Percent_Identity=28.9855072463768, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787112, Length=231, Percent_Identity=29.4372294372294, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786398, Length=231, Percent_Identity=25.974025974026, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789593, Length=163, Percent_Identity=31.2883435582822, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87081834, Length=217, Percent_Identity=29.4930875576037, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786345, Length=197, Percent_Identity=28.4263959390863, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789891, Length=211, Percent_Identity=27.9620853080569, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789032, Length=199, Percent_Identity=29.6482412060301, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1788897, Length=196, Percent_Identity=29.5918367346939, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1787029, Length=204, Percent_Identity=27.9411764705882, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787143, Length=205, Percent_Identity=27.8048780487805, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787759, Length=214, Percent_Identity=29.4392523364486, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786803, Length=239, Percent_Identity=24.6861924686192, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI48994883, Length=214, Percent_Identity=27.5700934579439, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788506, Length=215, Percent_Identity=26.046511627907, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790544, Length=209, Percent_Identity=28.7081339712919, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788053, Length=217, Percent_Identity=29.0322580645161, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87081782, Length=186, Percent_Identity=27.4193548387097, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI48994943, Length=202, Percent_Identity=28.7128712871287, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787758, Length=201, Percent_Identity=28.3582089552239, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1788644, Length=258, Percent_Identity=28.2945736434109, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1786703, Length=194, Percent_Identity=30.9278350515464, Blast_Score=61, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17565586, Length=202, Percent_Identity=30.1980198019802, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI71983516, Length=206, Percent_Identity=29.126213592233, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI71983510, Length=206, Percent_Identity=29.126213592233, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI71983523, Length=206, Percent_Identity=29.126213592233, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17565938, Length=222, Percent_Identity=30.6306306306306, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17558664, Length=215, Percent_Identity=30.6976744186047, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI193211015, Length=236, Percent_Identity=28.8135593220339, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI193211017, Length=236, Percent_Identity=28.8135593220339, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI25146777, Length=225, Percent_Identity=28, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17569145, Length=206, Percent_Identity=30.0970873786408, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI71996809, Length=236, Percent_Identity=28.3898305084746, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17567265, Length=208, Percent_Identity=29.3269230769231, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI71984940, Length=222, Percent_Identity=27.4774774774775, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17567269, Length=211, Percent_Identity=30.3317535545024, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI115533608, Length=215, Percent_Identity=27.906976744186, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17541710, Length=215, Percent_Identity=29.3023255813954, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI115533592, Length=216, Percent_Identity=29.1666666666667, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17555318, Length=180, Percent_Identity=30, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17569143, Length=206, Percent_Identity=28.6407766990291, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI193208177, Length=224, Percent_Identity=25.4464285714286, Blast_Score=67, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6323959, Length=218, Percent_Identity=29.3577981651376, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6324985, Length=216, Percent_Identity=27.7777777777778, Blast_Score=67, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6320874, Length=176, Percent_Identity=27.8409090909091, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI85726357, Length=217, Percent_Identity=29.4930875576037, Blast_Score=84, Evalue=7e-17,
Organism=Drosophila melanogaster, GI24650855, Length=195, Percent_Identity=28.7179487179487, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24650853, Length=195, Percent_Identity=28.7179487179487, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI281362751, Length=195, Percent_Identity=28.7179487179487, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI281363262, Length=223, Percent_Identity=30.0448430493274, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24653245, Length=223, Percent_Identity=30.0448430493274, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI24659289, Length=213, Percent_Identity=28.169014084507, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI17136662, Length=223, Percent_Identity=29.5964125560538, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24643674, Length=218, Percent_Identity=28.8990825688073, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24641565, Length=214, Percent_Identity=28.0373831775701, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI221512771, Length=214, Percent_Identity=24.7663551401869, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24641342, Length=184, Percent_Identity=30.9782608695652, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24582014, Length=216, Percent_Identity=25.9259259259259, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24582012, Length=216, Percent_Identity=25.9259259259259, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 31462; Mature: 31331

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNTVLQLDNVEFRRNRRVIITDVNLTINAGERWVLFGPNGIGKSTAVDMLATRTFPSEG
CCCCEEEECCCHHHCCCEEEEEEEEEEEECCCEEEEECCCCCCCHHHHHHHHHCCCCCCC
RVFILGHQLGKYDVFKLRTRIGLASADLGRQFPEFEDPLDAVVTGLSAVTGRWRDTYTQE
CEEEEECCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHCCCHH
EYARARQLLRDFRVSYLEGKEMWRLSEGERTRVLIARALMGDPELLIMDEPTTGLDLGGR
HHHHHHHHHHHHHHHHHCCCHHEECCCCCCHHHEEEHHHCCCCCEEEEECCCCCCCCCCH
EQVMRTLSRIGEESSERAVVLVTHRLEEIPAGFDHIAIMGRKPIPAEDATEAGVDSMGNP
HHHHHHHHHHCCCCCCCEEEEEEEHHHHCCCCCCEEEEECCCCCCCCCCHHHCCCCCCCC
GAGTIVYTGSLENGLTDERLSELFGMPIEVQHTHGRWAAYAV
CCCEEEEECCCCCCCCHHHHHHHHCCCEEEEECCCCEEEEEC
>Mature Secondary Structure 
TNTVLQLDNVEFRRNRRVIITDVNLTINAGERWVLFGPNGIGKSTAVDMLATRTFPSEG
CCCEEEECCCHHHCCCEEEEEEEEEEEECCCEEEEECCCCCCCHHHHHHHHHCCCCCCC
RVFILGHQLGKYDVFKLRTRIGLASADLGRQFPEFEDPLDAVVTGLSAVTGRWRDTYTQE
CEEEEECCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHCCCHH
EYARARQLLRDFRVSYLEGKEMWRLSEGERTRVLIARALMGDPELLIMDEPTTGLDLGGR
HHHHHHHHHHHHHHHHHCCCHHEECCCCCCHHHEEEHHHCCCCCEEEEECCCCCCCCCCH
EQVMRTLSRIGEESSERAVVLVTHRLEEIPAGFDHIAIMGRKPIPAEDATEAGVDSMGNP
HHHHHHHHHHCCCCCCCEEEEEEEHHHHCCCCCCEEEEECCCCCCCCCCHHHCCCCCCCC
GAGTIVYTGSLENGLTDERLSELFGMPIEVQHTHGRWAAYAV
CCCEEEEECCCCCCCCHHHHHHHHCCCEEEEECCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]