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The map label for this gene is ydcM [C]

Identifier: 213692188

GI number: 213692188

Start: 1492270

End: 1493415

Strand: Direct

Name: ydcM [C]

Synonym: Blon_1308

Alternate gene names: 213692188

Gene position: 1492270-1493415 (Clockwise)

Preceding gene: 213692187

Following gene: 213692189

Centisome position: 52.68

GC content: 59.51

Gene sequence:

>1146_bases
ATGAACACGACGACAATCACACGACGTAGGGCGATCAGGTTCGCCTACCCCACCAAGGGGCAGGCGAACCTGATCGACCG
CACCATCGGCTGCGCGCGCCTCGTGTACAACCTCATGTTGGAAACACGCATCGCCTCCTACCAGTCCCGGTTCGGCATGC
CCGACGCGCAAGGCAAGGAACCGCCGCCGACGCCAAGACTGTACAAGGACGACTATCCCTTCCTCATAGACGTGGACAGT
ATGGCCCTGTGCAACGCGCAAATGCACTTGGACAAGGCATACCGCAGCTTCTTCGCCAACCCCAAGTCAGTCTTCCCGAA
ATACAAGAGCAAGCACCGCTCCCGCCAGACCTACACGACCAACTGCATCAGGAACAACATCCGATTCGAGAACGGAGGCA
CCCGACTCAGACTACCCAAGGTCGGACCCATCAAGGTTCGCCAGCACAAGCGCATACCCGACGACTGGAAACTCAAAAGC
GTCACCGTCGAGCACTGCCCATCCGGCAGGTACGAGGCCACTGTCCTGTTCGAGTACGAGACCCAAGCACCCGAACCCGT
ACATCCCAGCACCTTCGTCGGATTGGACTATTCGTCGCATGACCTGTACGTGACCAGCGACGGGGAGCACGCGGGATACC
CGCGCTTTTACCGGCAATGGCAGGAACGGCTCGCTTTCGAGCAGCGCAAATGGTCTCGCATGGTCAAAGGCTCAGCCAAC
TGGTCCAAGCAGAAACGCAAGGTCGCCAAGGTGCATGAGCGTATCCGTGACATGCGCATGGACTTCCTGCGCAAGGCCGC
GAACCGCATATCCGAATCCTATGATTGCGTATGCGTCGAGGATTTGGACCTGCACGCCATAGCGCAGACACTGCGCCTAG
GCAAAAGCACCATGGACAACGGGTTCGGCATGCTGCGCGCCATGCTTGACCGCAAACTCGTGGAGCAGGGCAAACCCGGC
TTGGTCAAGGTTGGCAAATGGTATCCGTCCAGCCAACTGTGCTCCGACTGCGGGCATCGGTATGCGGGCGCCAAGGATTT
GAGCGTGCGCGAATGGGCGTGCCCGGAGTGTGGTGCATGGCACGACAGGGACGTGAACGCCGCCAAGAACATCAGAGACG
AGGGACGACGCCTTTCCCTGCAATAG

Upstream 100 bases:

>100_bases
CCTGGAAGGAATATTTCTGGAGCCGCAGCTTCTGCCTGCTCACCACAAGAGGCGCGCCCATCGAGGTGATACGCCGGTAC
ATCGAGAGTCAGGGACGCAA

Downstream 100 bases:

>100_bases
TAGGATGACAGTCGTGAACCGTGGGGCGCACGGGGATAGCCTGCTGATACTGGCACCGCTGGGTGTCTTGAACGGGAAGC
TCCCACCTCAAACGTCCGTC

Product: transposase, IS891/IS1136/IS1341 family

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MNTTTITRRRAIRFAYPTKGQANLIDRTIGCARLVYNLMLETRIASYQSRFGMPDAQGKEPPPTPRLYKDDYPFLIDVDS
MALCNAQMHLDKAYRSFFANPKSVFPKYKSKHRSRQTYTTNCIRNNIRFENGGTRLRLPKVGPIKVRQHKRIPDDWKLKS
VTVEHCPSGRYEATVLFEYETQAPEPVHPSTFVGLDYSSHDLYVTSDGEHAGYPRFYRQWQERLAFEQRKWSRMVKGSAN
WSKQKRKVAKVHERIRDMRMDFLRKAANRISESYDCVCVEDLDLHAIAQTLRLGKSTMDNGFGMLRAMLDRKLVEQGKPG
LVKVGKWYPSSQLCSDCGHRYAGAKDLSVREWACPECGAWHDRDVNAAKNIRDEGRRLSLQ

Sequences:

>Translated_381_residues
MNTTTITRRRAIRFAYPTKGQANLIDRTIGCARLVYNLMLETRIASYQSRFGMPDAQGKEPPPTPRLYKDDYPFLIDVDS
MALCNAQMHLDKAYRSFFANPKSVFPKYKSKHRSRQTYTTNCIRNNIRFENGGTRLRLPKVGPIKVRQHKRIPDDWKLKS
VTVEHCPSGRYEATVLFEYETQAPEPVHPSTFVGLDYSSHDLYVTSDGEHAGYPRFYRQWQERLAFEQRKWSRMVKGSAN
WSKQKRKVAKVHERIRDMRMDFLRKAANRISESYDCVCVEDLDLHAIAQTLRLGKSTMDNGFGMLRAMLDRKLVEQGKPG
LVKVGKWYPSSQLCSDCGHRYAGAKDLSVREWACPECGAWHDRDVNAAKNIRDEGRRLSLQ
>Mature_381_residues
MNTTTITRRRAIRFAYPTKGQANLIDRTIGCARLVYNLMLETRIASYQSRFGMPDAQGKEPPPTPRLYKDDYPFLIDVDS
MALCNAQMHLDKAYRSFFANPKSVFPKYKSKHRSRQTYTTNCIRNNIRFENGGTRLRLPKVGPIKVRQHKRIPDDWKLKS
VTVEHCPSGRYEATVLFEYETQAPEPVHPSTFVGLDYSSHDLYVTSDGEHAGYPRFYRQWQERLAFEQRKWSRMVKGSAN
WSKQKRKVAKVHERIRDMRMDFLRKAANRISESYDCVCVEDLDLHAIAQTLRLGKSTMDNGFGMLRAMLDRKLVEQGKPG
LVKVGKWYPSSQLCSDCGHRYAGAKDLSVREWACPECGAWHDRDVNAAKNIRDEGRRLSLQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=320, Percent_Identity=29.375, Blast_Score=122, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 44112; Mature: 44112

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTTTITRRRAIRFAYPTKGQANLIDRTIGCARLVYNLMLETRIASYQSRFGMPDAQGKE
CCCCCCCHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PPPTPRLYKDDYPFLIDVDSMALCNAQMHLDKAYRSFFANPKSVFPKYKSKHRSRQTYTT
CCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHCCHHHHH
NCIRNNIRFENGGTRLRLPKVGPIKVRQHKRIPDDWKLKSVTVEHCPSGRYEATVLFEYE
HHHHCCCEECCCCCEEECCCCCCEEEHHCCCCCCCCEEEEEEHHHCCCCCEEEEEEEEEC
TQAPEPVHPSTFVGLDYSSHDLYVTSDGEHAGYPRFYRQWQERLAFEQRKWSRMVKGSAN
CCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
WSKQKRKVAKVHERIRDMRMDFLRKAANRISESYDCVCVEDLDLHAIAQTLRLGKSTMDN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHH
GFGMLRAMLDRKLVEQGKPGLVKVGKWYPSSQLCSDCGHRYAGAKDLSVREWACPECGAW
HHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCHHCCCCCCCCC
HDRDVNAAKNIRDEGRRLSLQ
CCCCCCHHHHHHHCCCEECCC
>Mature Secondary Structure
MNTTTITRRRAIRFAYPTKGQANLIDRTIGCARLVYNLMLETRIASYQSRFGMPDAQGKE
CCCCCCCHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PPPTPRLYKDDYPFLIDVDSMALCNAQMHLDKAYRSFFANPKSVFPKYKSKHRSRQTYTT
CCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHCCHHHHH
NCIRNNIRFENGGTRLRLPKVGPIKVRQHKRIPDDWKLKSVTVEHCPSGRYEATVLFEYE
HHHHCCCEECCCCCEEECCCCCCEEEHHCCCCCCCCEEEEEEHHHCCCCCEEEEEEEEEC
TQAPEPVHPSTFVGLDYSSHDLYVTSDGEHAGYPRFYRQWQERLAFEQRKWSRMVKGSAN
CCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
WSKQKRKVAKVHERIRDMRMDFLRKAANRISESYDCVCVEDLDLHAIAQTLRLGKSTMDN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHH
GFGMLRAMLDRKLVEQGKPGLVKVGKWYPSSQLCSDCGHRYAGAKDLSVREWACPECGAW
HHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCHHCCCCCCCCC
HDRDVNAAKNIRDEGRRLSLQ
CCCCCCHHHHHHHCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]