| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is 213692139
Identifier: 213692139
GI number: 213692139
Start: 1448738
End: 1451659
Strand: Direct
Name: 213692139
Synonym: Blon_1259
Alternate gene names: NA
Gene position: 1448738-1451659 (Clockwise)
Preceding gene: 213692138
Following gene: 213692145
Centisome position: 51.14
GC content: 66.91
Gene sequence:
>2922_bases ATGTCACGCAAACTCACATCAGTCGCGGTGGCCGCGACGGCCACGCTCGCCACGCTCGCCGCCCCCGCGGTCGCCATGGC CGACGAGACCACGACCACGGATCAGGCCAGTCAGGCGATCACGCAGGCGCAGGACAGCGTCGCGCAGGCCCAACAAAGCA CGGCGGACGCCAATCAGGCGATCGCGCAGGCCGCGCCTACCGGCGTGACCGAAGCGCAGGCGAAGGCCGACGCCGCCGCG GCCGCGTTGGACACCGCCAAGCGGAACCTCGACGACGCCGCCGCCCAGCAGCAGACGGCCGCGAACGGCCAGCAGCAGGC CCAGAAAAATTATGACGACGCCAACAAGGCCCAGCAGCAGGCCGCCGAGGACGCGACGAACACGGCCGACAAGATCGCGG CCGCGCAGCAGGCCGCCAAGGACGCGTCCAACGCGATCAATGATGCGAACAAGGCCATGCAGCAGGCCTCCGGCAACCAG TCCAAGGCCGAAACCGACAAGCAGGCCGCACAGACCGCGAAGGATGAAGCCACGGCCGAATCCGCCTCCCATCAGCAGGC TGCCGACAAGGCCCAGACCGATATCGATGCGGCCGACAGGCAGGCCACGGACGCGCAGAAGAAGGCCGATGCGGCGGATA CCGCCATCAGTGATGCGCAGAAGAAGGCCGACCGGGCCGATGGGGACGCGAAGCAGGCCGCGAGTGACAAGGCCGCCGCC GAGAAGGAGCTGACGGAAGCCAGGAGGCAGCAGGCCTCGGCGACCGGCGACAAGACGAAGGCCGACGAGGCGGTGAACGC CGCGCAGGCCAGGCTGGATGCGGCCGGGCAGGCCGAGGCCAAGGCGCTTGAAGCCAAGCGGAAGGCCGACGCCAAGGTCG ATCAATTGTCCAAGGATGATGGAGGTCTTTCCGACCTGGCCGCGAAGCTCGAAGCGGCGAAGAAGGCCGCAGCCGATGCC GCGGCCGCCCAGCAGAAGGCGGAACAGGCGCGGAAGGACGCGGACAAGACGGCGTCCGACTCCTCTTCCAACGCCACGGC GAAGCGGCAGGCCGCCGAACAGGCGAAGGCCGAGGCCGACCGGCTGAAGCAGGTCGCGGCGGACGCGCAATCGAAGCTCT CGCAGGGTGCGGTCGCCTACTTCGGCGACCGGAACGCGTCGGACGCGGTCAAGGTCCTCACCGACAAGGACACGACCCTC TTCCTGTCCAGCATCCAGAACGGGGCGAAGGGCGATGCGACCAGCCTCGACAACATGATCGCCGCGCTCTCGTATATCAA GGAGGCGAACCAGCTTCGCGCCAAGGAGGGATTGGCCCCGTTGAAGGTGTCGGACACGCTCATGGCGATGAGCATGGCGA ACGTCGACTGGTCCGACGACAACATCGGCCATTCCGGCCAGTTCAACGTCGGCGAGAACATGGCCTGGGGGTTCAAGGAC CCGTTCGACGGCTGGTACACGGCCGAGAAGGCCAGTTACGAGAAGGACATGACCGACGGCGTGCTGGACGGCAAGGACAA GGACGGGAACGTGGTGGGCGGGACCGGCCATTATCTGAACATCGTCAACAAGGGGTATACGGTCACCGGCTTCGCGATCA GCCAGAACGGGACGACCGGCTTCGGGACCACGCACGGGCAGACGTTCCAATACGCGGCCCCCGACCAGTCGGGGCGTGTC ATGGACGTGGACGCGTATCTGGCGGATCTGACCGCATGGCGTGATTCGCTGACCAACGCGGACGCGAACTGGCAGACCGC ATTGTCCAAGAGCAAGCAGGCCGCACAGGACGCTTCCGATGCGGCCGAGGCGCTGGCCGCCGCACAGCAGGCCGCGCGGA AGGCCGCCGAGGAAGCCCAGCAGGCCGCACAGAAGGCCAAGGATCTGCAGGCCGCCGCCGACGAGGCGCAGAAAGCGTAT GACGAGGCCGTGAAGGCGAACGCGGACAAGGCCAAGGCGTTGGAGGAAGCCAGGAAGGATCAGACGGCGAAGAACGAAGC GTACTCCGCCGCCCAGCAGTCCACCAAGGAAGCCCGGTCCGGAGCCGCCGCCGCCACCGCCGCCCAGACCGCAGCCCAGA CGGCAGTGGACAAGGCGAACACGGCGGTCGCCGCCGCGCAGGCGAAGATCGATGCCGCCGACAAGCTGGCCCAAACCGCC GCCAAGAACAAGACGGATGCGGAAGCCGCGATCAGGCAGGCCAACACGGACAAGACGAAGGCCGAAGCCGACCTGGCCGA CGCCAAGGCAGCCAAGGCCGAGGCCGAGAAGGCCAAGCAGGCCGCGCTCGAAGCCAAGACCGTTTCCGACGCGAAGGTTG AAGCCGCCGGCAAGCAGGTCAAGGCCGCCGACGAGGCCATCGCCAACGCCAAGGCCGCATACGCGAAGGCGAAGGACGAT CTCGACACGGCCACCGGCAAGCTCGACGATGCCCGGAACACCATCAAGCGTTTGCAGAACGCCGAGGAGAACCTCAAGAA GGCGAACGCGAAGCTGACGGAAGCGCAGGCGAAGCTGGACGAGGCGAACAAGGCCAAGGATGCGGCCGACAAGGCGTACG AGAAGGCCAAGGCCGACTATGATGCCAAGCTCGCCGACAAGCAGGCGTCCGACAAGGAGCTCGCCAATGCGAAGCAGGCC GAAGCCGAAGCCAAGAAGAAGGCCGAGGAGGAAGCCAGGAAGCAGCAGGAGGCCCAGAAGCAGGCCGACCAGGCCAAGCA GGACGCCGAAGCCAAGAAGCAGAAGGCCGAACAGGCCAGGAAGCAGGCCGCAGGCGTGACGAACAATGGTCTGGCCTCCA CCGGATCGGACACCGCCGCAATCGCCACATTGGCGGCGATCATGACCCTCACGGGCGCCGGCTGCGTGCTCGTGAAGGTG CGTGCCGCCAAGCATGCGGACGGATGGCATGTGAACGACTGA
Upstream 100 bases:
>100_bases GGGTCCGTGCGTCGAATGATGAGACGGGACCGTCGATATGGTCCACTTCCTCCTATGATGGAGGGTTGGATAAGGAAGTC CCGGAAGAAAGGATTCGAAC
Downstream 100 bases:
>100_bases CGGATTCCAATCCGTCGGGAACATCAAGGACCCGTCTCATCCGCGAAGCAACATCACGGATGAGACGGGTCCTTGATCCG TATGGGACGGCTATCGACGT
Product: Allergen V5/Tpx-1 family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 973; Mature: 972
Protein sequence:
>973_residues MSRKLTSVAVAATATLATLAAPAVAMADETTTTDQASQAITQAQDSVAQAQQSTADANQAIAQAAPTGVTEAQAKADAAA AALDTAKRNLDDAAAQQQTAANGQQQAQKNYDDANKAQQQAAEDATNTADKIAAAQQAAKDASNAINDANKAMQQASGNQ SKAETDKQAAQTAKDEATAESASHQQAADKAQTDIDAADRQATDAQKKADAADTAISDAQKKADRADGDAKQAASDKAAA EKELTEARRQQASATGDKTKADEAVNAAQARLDAAGQAEAKALEAKRKADAKVDQLSKDDGGLSDLAAKLEAAKKAAADA AAAQQKAEQARKDADKTASDSSSNATAKRQAAEQAKAEADRLKQVAADAQSKLSQGAVAYFGDRNASDAVKVLTDKDTTL FLSSIQNGAKGDATSLDNMIAALSYIKEANQLRAKEGLAPLKVSDTLMAMSMANVDWSDDNIGHSGQFNVGENMAWGFKD PFDGWYTAEKASYEKDMTDGVLDGKDKDGNVVGGTGHYLNIVNKGYTVTGFAISQNGTTGFGTTHGQTFQYAAPDQSGRV MDVDAYLADLTAWRDSLTNADANWQTALSKSKQAAQDASDAAEALAAAQQAARKAAEEAQQAAQKAKDLQAAADEAQKAY DEAVKANADKAKALEEARKDQTAKNEAYSAAQQSTKEARSGAAAATAAQTAAQTAVDKANTAVAAAQAKIDAADKLAQTA AKNKTDAEAAIRQANTDKTKAEADLADAKAAKAEAEKAKQAALEAKTVSDAKVEAAGKQVKAADEAIANAKAAYAKAKDD LDTATGKLDDARNTIKRLQNAEENLKKANAKLTEAQAKLDEANKAKDAADKAYEKAKADYDAKLADKQASDKELANAKQA EAEAKKKAEEEARKQQEAQKQADQAKQDAEAKKQKAEQARKQAAGVTNNGLASTGSDTAAIATLAAIMTLTGAGCVLVKV RAAKHADGWHVND
Sequences:
>Translated_973_residues MSRKLTSVAVAATATLATLAAPAVAMADETTTTDQASQAITQAQDSVAQAQQSTADANQAIAQAAPTGVTEAQAKADAAA AALDTAKRNLDDAAAQQQTAANGQQQAQKNYDDANKAQQQAAEDATNTADKIAAAQQAAKDASNAINDANKAMQQASGNQ SKAETDKQAAQTAKDEATAESASHQQAADKAQTDIDAADRQATDAQKKADAADTAISDAQKKADRADGDAKQAASDKAAA EKELTEARRQQASATGDKTKADEAVNAAQARLDAAGQAEAKALEAKRKADAKVDQLSKDDGGLSDLAAKLEAAKKAAADA AAAQQKAEQARKDADKTASDSSSNATAKRQAAEQAKAEADRLKQVAADAQSKLSQGAVAYFGDRNASDAVKVLTDKDTTL FLSSIQNGAKGDATSLDNMIAALSYIKEANQLRAKEGLAPLKVSDTLMAMSMANVDWSDDNIGHSGQFNVGENMAWGFKD PFDGWYTAEKASYEKDMTDGVLDGKDKDGNVVGGTGHYLNIVNKGYTVTGFAISQNGTTGFGTTHGQTFQYAAPDQSGRV MDVDAYLADLTAWRDSLTNADANWQTALSKSKQAAQDASDAAEALAAAQQAARKAAEEAQQAAQKAKDLQAAADEAQKAY DEAVKANADKAKALEEARKDQTAKNEAYSAAQQSTKEARSGAAAATAAQTAAQTAVDKANTAVAAAQAKIDAADKLAQTA AKNKTDAEAAIRQANTDKTKAEADLADAKAAKAEAEKAKQAALEAKTVSDAKVEAAGKQVKAADEAIANAKAAYAKAKDD LDTATGKLDDARNTIKRLQNAEENLKKANAKLTEAQAKLDEANKAKDAADKAYEKAKADYDAKLADKQASDKELANAKQA EAEAKKKAEEEARKQQEAQKQADQAKQDAEAKKQKAEQARKQAAGVTNNGLASTGSDTAAIATLAAIMTLTGAGCVLVKV RAAKHADGWHVND >Mature_972_residues SRKLTSVAVAATATLATLAAPAVAMADETTTTDQASQAITQAQDSVAQAQQSTADANQAIAQAAPTGVTEAQAKADAAAA ALDTAKRNLDDAAAQQQTAANGQQQAQKNYDDANKAQQQAAEDATNTADKIAAAQQAAKDASNAINDANKAMQQASGNQS KAETDKQAAQTAKDEATAESASHQQAADKAQTDIDAADRQATDAQKKADAADTAISDAQKKADRADGDAKQAASDKAAAE KELTEARRQQASATGDKTKADEAVNAAQARLDAAGQAEAKALEAKRKADAKVDQLSKDDGGLSDLAAKLEAAKKAAADAA AAQQKAEQARKDADKTASDSSSNATAKRQAAEQAKAEADRLKQVAADAQSKLSQGAVAYFGDRNASDAVKVLTDKDTTLF LSSIQNGAKGDATSLDNMIAALSYIKEANQLRAKEGLAPLKVSDTLMAMSMANVDWSDDNIGHSGQFNVGENMAWGFKDP FDGWYTAEKASYEKDMTDGVLDGKDKDGNVVGGTGHYLNIVNKGYTVTGFAISQNGTTGFGTTHGQTFQYAAPDQSGRVM DVDAYLADLTAWRDSLTNADANWQTALSKSKQAAQDASDAAEALAAAQQAARKAAEEAQQAAQKAKDLQAAADEAQKAYD EAVKANADKAKALEEARKDQTAKNEAYSAAQQSTKEARSGAAAATAAQTAAQTAVDKANTAVAAAQAKIDAADKLAQTAA KNKTDAEAAIRQANTDKTKAEADLADAKAAKAEAEKAKQAALEAKTVSDAKVEAAGKQVKAADEAIANAKAAYAKAKDDL DTATGKLDDARNTIKRLQNAEENLKKANAKLTEAQAKLDEANKAKDAADKAYEKAKADYDAKLADKQASDKELANAKQAE AEAKKKAEEEARKQQEAQKQADQAKQDAEAKKQKAEQARKQAAGVTNNGLASTGSDTAAIATLAAIMTLTGAGCVLVKVR AAKHADGWHVND
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 100782; Mature: 100651
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRKLTSVAVAATATLATLAAPAVAMADETTTTDQASQAITQAQDSVAQAQQSTADANQA CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH IAQAAPTGVTEAQAKADAAAAALDTAKRNLDDAAAQQQTAANGQQQAQKNYDDANKAQQQ HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHH AAEDATNTADKIAAAQQAAKDASNAINDANKAMQQASGNQSKAETDKQAAQTAKDEATAE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH SASHQQAADKAQTDIDAADRQATDAQKKADAADTAISDAQKKADRADGDAKQAASDKAAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH EKELTEARRQQASATGDKTKADEAVNAAQARLDAAGQAEAKALEAKRKADAKVDQLSKDD HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC GGLSDLAAKLEAAKKAAADAAAAQQKAEQARKDADKTASDSSSNATAKRQAAEQAKAEAD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH RLKQVAADAQSKLSQGAVAYFGDRNASDAVKVLTDKDTTLFLSSIQNGAKGDATSLDNMI HHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHEECCCHHHHHHHHCCCCCCCHHHHHHHH AALSYIKEANQLRAKEGLAPLKVSDTLMAMSMANVDWSDDNIGHSGQFNVGENMAWGFKD HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC PFDGWYTAEKASYEKDMTDGVLDGKDKDGNVVGGTGHYLNIVNKGYTVTGFAISQNGTTG CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHEEECCCEEEEEEEEECCCCCC FGTTHGQTFQYAAPDQSGRVMDVDAYLADLTAWRDSLTNADANWQTALSKSKQAAQDASD CCCCCCCEEEECCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH AAEALAAAQQAARKAAEEAQQAAQKAKDLQAAADEAQKAYDEAVKANADKAKALEEARKD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH QTAKNEAYSAAQQSTKEARSGAAAATAAQTAAQTAVDKANTAVAAAQAKIDAADKLAQTA HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AKNKTDAEAAIRQANTDKTKAEADLADAKAAKAEAEKAKQAALEAKTVSDAKVEAAGKQV HCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KAADEAIANAKAAYAKAKDDLDTATGKLDDARNTIKRLQNAEENLKKANAKLTEAQAKLD HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EANKAKDAADKAYEKAKADYDAKLADKQASDKELANAKQAEAEAKKKAEEEARKQQEAQK HHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QADQAKQDAEAKKQKAEQARKQAAGVTNNGLASTGSDTAAIATLAAIMTLTGAGCVLVKV HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEE RAAKHADGWHVND HHHCCCCCCCCCC >Mature Secondary Structure SRKLTSVAVAATATLATLAAPAVAMADETTTTDQASQAITQAQDSVAQAQQSTADANQA CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH IAQAAPTGVTEAQAKADAAAAALDTAKRNLDDAAAQQQTAANGQQQAQKNYDDANKAQQQ HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHH AAEDATNTADKIAAAQQAAKDASNAINDANKAMQQASGNQSKAETDKQAAQTAKDEATAE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH SASHQQAADKAQTDIDAADRQATDAQKKADAADTAISDAQKKADRADGDAKQAASDKAAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH EKELTEARRQQASATGDKTKADEAVNAAQARLDAAGQAEAKALEAKRKADAKVDQLSKDD HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC GGLSDLAAKLEAAKKAAADAAAAQQKAEQARKDADKTASDSSSNATAKRQAAEQAKAEAD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH RLKQVAADAQSKLSQGAVAYFGDRNASDAVKVLTDKDTTLFLSSIQNGAKGDATSLDNMI HHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHEECCCHHHHHHHHCCCCCCCHHHHHHHH AALSYIKEANQLRAKEGLAPLKVSDTLMAMSMANVDWSDDNIGHSGQFNVGENMAWGFKD HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC PFDGWYTAEKASYEKDMTDGVLDGKDKDGNVVGGTGHYLNIVNKGYTVTGFAISQNGTTG CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHEEECCCEEEEEEEEECCCCCC FGTTHGQTFQYAAPDQSGRVMDVDAYLADLTAWRDSLTNADANWQTALSKSKQAAQDASD CCCCCCCEEEECCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH AAEALAAAQQAARKAAEEAQQAAQKAKDLQAAADEAQKAYDEAVKANADKAKALEEARKD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH QTAKNEAYSAAQQSTKEARSGAAAATAAQTAAQTAVDKANTAVAAAQAKIDAADKLAQTA HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AKNKTDAEAAIRQANTDKTKAEADLADAKAAKAEAEKAKQAALEAKTVSDAKVEAAGKQV HCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KAADEAIANAKAAYAKAKDDLDTATGKLDDARNTIKRLQNAEENLKKANAKLTEAQAKLD HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EANKAKDAADKAYEKAKADYDAKLADKQASDKELANAKQAEAEAKKKAEEEARKQQEAQK HHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QADQAKQDAEAKKQKAEQARKQAAGVTNNGLASTGSDTAAIATLAAIMTLTGAGCVLVKV HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEE RAAKHADGWHVND HHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA