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The map label for this gene is ydcM [C]

Identifier: 213692107

GI number: 213692107

Start: 1408742

End: 1410064

Strand: Direct

Name: ydcM [C]

Synonym: Blon_1226

Alternate gene names: 213692107

Gene position: 1408742-1410064 (Clockwise)

Preceding gene: 213692106

Following gene: 213692108

Centisome position: 49.73

GC content: 61.6

Gene sequence:

>1323_bases
ATGAGCGCGTATGAGGCCGTTAGGATTCGGCTCGACCCAACCCCACGGCAGACACGGCTGTTGGAGTCCCATGCGGGTGG
TGCGCGTTTCGCGTACAATCTGATGCTCGCGCACGTCCGGCGCCAAATCTCCTTGGGTGAGAAACCGGACTGGACGTTGT
ACGCGATGCGCCGCTGGTGGAACGAGTGGAAGGACGAAATCGCCCCGTGGTGGCGAGAGAACAGCAAGGAGGCGTACGGC
AGCGCGTTTGAATGGCTGTCCCAAGCGTTGAGGAACTGGTCGGACAGCAGGAAGGGCAGGCGCGCGGGCCGTAGGGTGGG
CTGGCCGAAATACAAGTCGAAACGCTCCAGTGTCCCGCGTTTCGCATACACGACCGGCAGCTTCGGCCTTATCGAGGACG
ACCCGAAGGCGTTGAAACTGCCACGCATCGGACGCGTGCACTGCATGGAGAACGCCACCGAACGCGTCCACGGCAGACGA
ATCGTGCGCATGACCGTCAGTCGCCATGCGGGCTTCTGGTATGCGGCCCTCACCGTCGAACGTCCCACCGAAAGCGTTCC
AGCGAAAAACAGAAAACAGAAGAACCGTAATCGTCAGGTCGGCGTGGATTTGGGCGTCAGGACCCTCGCCACCCTCTCGG
ATGGCACCACGTTCCCCAATCCACGCAACTACGTCCGCACGCAGCGGAAACTCCGCCACGCCCAACAGTCGTTGAGCCGC
CGCGATAGGGGCATGAGCCATGGATGCGGGTCGAAACGGTACAACAGGGCGTTGGAGCGTGTGCGCCGAATCCACGCTCG
CATAGCCGCCCAACGAGCCGACAACATCGGCAAGCTCACCACGTGGCTTGCCGACAATTATTCCGACATCAGCATCGAGG
ACCTCAACGTGCAGGGCATGAGCCATAACAGGAGGCTTGCCAAGCACGTACTGGACGCGGACTTCCGCGAGTTCCGCCGC
CAACTGGAATACAAGACCGCACGCGCCGGCACGAGGCTCCATGTCATCGACCGGTGGTATCCAAGCTCGAAGACCTGTTC
GAACTGCGGGACGGTGAAAGCCAAACTGTCCCTGTCCGAACGCGTCTACCATTGCGGCAAGTGCGGACTTGTCATCGACC
GTGATGTGAACGCGGCCATCAACATCCAAGTCGCCGGGAGTGCCCCGGAGACGTTAAACGCGCGTGGAGGAAGCGTAAGA
CAGACCCGCCTTGAGTGCGGGACAATGCGGCATCCGGCGAAACGCGAACCAAGCGGCGGCGACAGTCGCGTGAGACTTGG
AGCTGGTCTCGGCAACGAGGCCATGCAGATGACTTCGCTCTAG

Upstream 100 bases:

>100_bases
GTGCGCGACATGACCGAGGTGCTGACCTCGTTCTGCGCGAGACTGTACGGGCGTCGTGCCGCCAAGCACCGTGCGGAGAA
GGCGTTGGAGGCGATGCGCG

Downstream 100 bases:

>100_bases
CGACAAGCTAAAACAAAGTCATCTACAACGGAACCCGTTCCGGCCTGACATGGCGTCCGGGCCGTTCCCGTCCCATGCCT
CCCCCGGCCCGCATAGACGC

Product: transposase, IS605 OrfB family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 439

Protein sequence:

>440_residues
MSAYEAVRIRLDPTPRQTRLLESHAGGARFAYNLMLAHVRRQISLGEKPDWTLYAMRRWWNEWKDEIAPWWRENSKEAYG
SAFEWLSQALRNWSDSRKGRRAGRRVGWPKYKSKRSSVPRFAYTTGSFGLIEDDPKALKLPRIGRVHCMENATERVHGRR
IVRMTVSRHAGFWYAALTVERPTESVPAKNRKQKNRNRQVGVDLGVRTLATLSDGTTFPNPRNYVRTQRKLRHAQQSLSR
RDRGMSHGCGSKRYNRALERVRRIHARIAAQRADNIGKLTTWLADNYSDISIEDLNVQGMSHNRRLAKHVLDADFREFRR
QLEYKTARAGTRLHVIDRWYPSSKTCSNCGTVKAKLSLSERVYHCGKCGLVIDRDVNAAINIQVAGSAPETLNARGGSVR
QTRLECGTMRHPAKREPSGGDSRVRLGAGLGNEAMQMTSL

Sequences:

>Translated_440_residues
MSAYEAVRIRLDPTPRQTRLLESHAGGARFAYNLMLAHVRRQISLGEKPDWTLYAMRRWWNEWKDEIAPWWRENSKEAYG
SAFEWLSQALRNWSDSRKGRRAGRRVGWPKYKSKRSSVPRFAYTTGSFGLIEDDPKALKLPRIGRVHCMENATERVHGRR
IVRMTVSRHAGFWYAALTVERPTESVPAKNRKQKNRNRQVGVDLGVRTLATLSDGTTFPNPRNYVRTQRKLRHAQQSLSR
RDRGMSHGCGSKRYNRALERVRRIHARIAAQRADNIGKLTTWLADNYSDISIEDLNVQGMSHNRRLAKHVLDADFREFRR
QLEYKTARAGTRLHVIDRWYPSSKTCSNCGTVKAKLSLSERVYHCGKCGLVIDRDVNAAINIQVAGSAPETLNARGGSVR
QTRLECGTMRHPAKREPSGGDSRVRLGAGLGNEAMQMTSL
>Mature_439_residues
SAYEAVRIRLDPTPRQTRLLESHAGGARFAYNLMLAHVRRQISLGEKPDWTLYAMRRWWNEWKDEIAPWWRENSKEAYGS
AFEWLSQALRNWSDSRKGRRAGRRVGWPKYKSKRSSVPRFAYTTGSFGLIEDDPKALKLPRIGRVHCMENATERVHGRRI
VRMTVSRHAGFWYAALTVERPTESVPAKNRKQKNRNRQVGVDLGVRTLATLSDGTTFPNPRNYVRTQRKLRHAQQSLSRR
DRGMSHGCGSKRYNRALERVRRIHARIAAQRADNIGKLTTWLADNYSDISIEDLNVQGMSHNRRLAKHVLDADFREFRRQ
LEYKTARAGTRLHVIDRWYPSSKTCSNCGTVKAKLSLSERVYHCGKCGLVIDRDVNAAINIQVAGSAPETLNARGGSVRQ
TRLECGTMRHPAKREPSGGDSRVRLGAGLGNEAMQMTSL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=414, Percent_Identity=29.2270531400966, Blast_Score=132, Evalue=5e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 50335; Mature: 50204

Theoretical pI: Translated: 11.38; Mature: 11.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAYEAVRIRLDPTPRQTRLLESHAGGARFAYNLMLAHVRRQISLGEKPDWTLYAMRRWW
CCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
NEWKDEIAPWWRENSKEAYGSAFEWLSQALRNWSDSRKGRRAGRRVGWPKYKSKRSSVPR
HHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHCCCCC
FAYTTGSFGLIEDDPKALKLPRIGRVHCMENATERVHGRRIVRMTVSRHAGFWYAALTVE
EEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEHHHCCCEEEEEEEEE
RPTESVPAKNRKQKNRNRQVGVDLGVRTLATLSDGTTFPNPRNYVRTQRKLRHAQQSLSR
CCCCCCCCCHHHHHCCCCEECCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
RDRGMSHGCGSKRYNRALERVRRIHARIAAQRADNIGKLTTWLADNYSDISIEDLNVQGM
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEECEECCC
SHNRRLAKHVLDADFREFRRQLEYKTARAGTRLHVIDRWYPSSKTCSNCGTVKAKLSLSE
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEEEHHH
RVYHCGKCGLVIDRDVNAAINIQVAGSAPETLNARGGSVRQTRLECGTMRHPAKREPSGG
HHHHCCCCCEEEECCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
DSRVRLGAGLGNEAMQMTSL
CCEEEEECCCCHHHHHHCCC
>Mature Secondary Structure 
SAYEAVRIRLDPTPRQTRLLESHAGGARFAYNLMLAHVRRQISLGEKPDWTLYAMRRWW
CCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
NEWKDEIAPWWRENSKEAYGSAFEWLSQALRNWSDSRKGRRAGRRVGWPKYKSKRSSVPR
HHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHCCCCC
FAYTTGSFGLIEDDPKALKLPRIGRVHCMENATERVHGRRIVRMTVSRHAGFWYAALTVE
EEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEHHHCCCEEEEEEEEE
RPTESVPAKNRKQKNRNRQVGVDLGVRTLATLSDGTTFPNPRNYVRTQRKLRHAQQSLSR
CCCCCCCCCHHHHHCCCCEECCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
RDRGMSHGCGSKRYNRALERVRRIHARIAAQRADNIGKLTTWLADNYSDISIEDLNVQGM
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEECEECCC
SHNRRLAKHVLDADFREFRRQLEYKTARAGTRLHVIDRWYPSSKTCSNCGTVKAKLSLSE
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEEEHHH
RVYHCGKCGLVIDRDVNAAINIQVAGSAPETLNARGGSVRQTRLECGTMRHPAKREPSGG
HHHHCCCCCEEEECCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
DSRVRLGAGLGNEAMQMTSL
CCEEEEECCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]